View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_35 (Length: 317)
Name: NF17972_high_35
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 41028206 - 41028501
Alignment:
| Q |
18 |
attacttaatattattacagaaggaggaagtagaaacatggcaagacaatagtaaccgtcatagtcctcggcctcataaggtgagttgtt-gtctatttt |
116 |
Q |
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| T |
41028206 |
attacttaatattattacagaaggaggaagtagaaacatggcaagacaatagtaaccgtcatagtcctcggcctcataaggtgaattgtttgtctatttt |
41028305 |
T |
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| Q |
117 |
tataaataaataaatgtattgtggatgtaatgtatgcaactatgtttactgtcctacacttttttcttcaggaacaatatcgtc------ctcagaggca |
210 |
Q |
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| T |
41028306 |
tataaataaataaatgtattgtggatgtaatgtatgcaactatgtttactgtcctacacttttttcttcaggaacaatatcgtcctcagactcagaggca |
41028405 |
T |
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| Q |
211 |
ggagtatgaatctgaaactttcaactctcccaacagacacaacaaggtttgtatttttaatttaacagatgataattttgcaattttaacaccttt |
306 |
Q |
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| T |
41028406 |
ggagtatgaatctgaaactttcaactctcccaacagacacaacaaggtttgtatttttaatttaacagatgataattttgcaattttgacaccttt |
41028501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 41028999 - 41029138
Alignment:
| Q |
118 |
ataaataaataaatgtattgtggatgtaatgtatgcaactatgtttactgtcctacacttttttcttcaggaacaatatcgtcctcagaggcaggagtat |
217 |
Q |
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|||| ||||||||| ||| |||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
41028999 |
ataattaaataaatttatcgtggatgtaatgtatgtaactatgtttattgtactacactttt--cttcaggaacaatatcgtcctcagcagcaggagtat |
41029096 |
T |
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| Q |
218 |
gaatctgaaactttcaactctcccaacagacacaacaaggtt |
259 |
Q |
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| T |
41029097 |
gaatctgaaacgttcaacacctccaacagacccaacaaggtt |
41029138 |
T |
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