View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_43 (Length: 267)
Name: NF17972_high_43
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 34421466 - 34421559
Alignment:
| Q |
159 |
tacacatgtaatgaataaatatatttttctcattcttggtgcaatagtctaatatgtaaatatatttgttagcgctttcggaaccttatatttt |
252 |
Q |
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| T |
34421466 |
tacacatgtaatgtataaatatatttttctcattcttgatgcgagagtctaatatgtaaatatatttgttagcgttttcggaaccttatatttt |
34421559 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 34421318 - 34421395
Alignment:
| Q |
20 |
caaatttgaaaatgatacatgcacaattacttaacttaattgttaattttttctcgcattttgcccaaacctatattcc |
98 |
Q |
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| T |
34421318 |
caaatttgaaaatgatacatgcaca-ttacttaacttaattgttaattttttctcgcattttgcccaaacctatattcc |
34421395 |
T |
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