View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_46 (Length: 256)
Name: NF17972_high_46
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 8466697 - 8466877
Alignment:
| Q |
1 |
aataataacaattaaaaagaagcggatggatgaagtaatacattactccaaaatttgctctaagaatgaagcatctaatctgaattagttatcaatcttt |
100 |
Q |
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| T |
8466697 |
aataataacaattaaaaagaagcggatggatggagta---cattactccaaaatttgctccaagaatgaagcatctaatctgaattagttatcaatcttt |
8466793 |
T |
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| Q |
101 |
tcgcacttgtacctacgttttcttctcttattaaatgaataattaatcttgctcatcatttcacttcctatcttatttattgtg |
184 |
Q |
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| T |
8466794 |
tcgcacttgtacctacgttttcttctcttaataaatgaataattaatcttgctcatcatttcacttcctatcttatttattgtg |
8466877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 8466893 - 8466929
Alignment:
| Q |
204 |
caatgaagctccatcacatacccatctatcttaaata |
240 |
Q |
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| T |
8466893 |
caatgatgctccatcacatacccatctatcttaaata |
8466929 |
T |
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