View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_47 (Length: 251)
Name: NF17972_high_47
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 18035067 - 18034845
Alignment:
| Q |
11 |
caaaggcttcaaaactgtgtcttcttgttacctgcattcataaggatctggagaagattcgattttttcttgagtttgagagctgtttgaaagtagtcat |
110 |
Q |
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| T |
18035067 |
caaaggcttccaaactgtgtctt---gttacctgcattcttaaggatctggagaagattcgattttttcttgagtttgagagctgtttgaaagtagtcat |
18034971 |
T |
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| Q |
111 |
gttgagtaagcttagattctgaacaggtaccatgtttcatccattcatgtgaccaaagtctaataccatttccactagggcagctcaaagatggccaatt |
210 |
Q |
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| T |
18034970 |
gttgagtaagcttagattctgaacaggtaccatgtttcatccattcatgtgaccaaagtctaataccatttccactagggcagctcaaagatggccaatt |
18034871 |
T |
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| Q |
211 |
attttccaaacccttaatgaggtctg |
236 |
Q |
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| T |
18034870 |
attttccaaacccttaatgaggtctg |
18034845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 18047706 - 18047602
Alignment:
| Q |
72 |
attttttcttgagtttgagagctgtttgaaagtagtcatgttgagtaagcttagattctgaacaggtaccatgtttcatccattcatgtgaccaaagtct |
171 |
Q |
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| T |
18047706 |
attttttcttgagtttgagagccgtttgaaagtagtcatgttgagtaagcttagattctgaacaggtaccatgtttcatccattcatgtgaccatagttt |
18047607 |
T |
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| Q |
172 |
aatac |
176 |
Q |
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||||| |
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| T |
18047606 |
aatac |
18047602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 18052728 - 18052596
Alignment:
| Q |
33 |
tcttgttacctgcattcataaggatctggagaagattcgattttttcttgagtttgagagctgtttgaaagtagtcatgttgagtaagcttagattctga |
132 |
Q |
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| T |
18052728 |
tcttgttacctgcgtccttaagcatttgaagaaggttcagttttttcttgagtttgagagctgtttgaaagtagtcatgttgagaaagcttagattctga |
18052629 |
T |
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| Q |
133 |
acaggtaccatgtttcatccattcatgtgacca |
165 |
Q |
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| T |
18052628 |
acatgtgccatgtttcatccattcatgtgacca |
18052596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 210
Target Start/End: Complemental strand, 18029251 - 18029074
Alignment:
| Q |
33 |
tcttgttacctgcattcataaggatctggagaagattcgattttttcttgagtttgagagctgtttgaaagtagtcatgttgagtaagcttagattctga |
132 |
Q |
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| T |
18029251 |
tcttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagctcagattctgc |
18029152 |
T |
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| Q |
133 |
acaggtaccatgtttcatccattcatgtgaccaaagtctaataccatttccactagggcagctcaaagatggccaatt |
210 |
Q |
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||| |||||||||||| ||||||||||||||| | ||||| |||||| | ||| || ||||||| |||||||||||| |
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| T |
18029151 |
acatgtaccatgtttctcccattcatgtgaccagaatctaaaaccattgctacttggacagctcagagatggccaatt |
18029074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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