View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_61 (Length: 214)
Name: NF17972_high_61
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 47073140 - 47072943
Alignment:
| Q |
1 |
atctaaaactcattacccaaataagcaaatactcaaatcatatgtgttgatttgtgttgaacttataaattacaatgtttaaaaatactcaaatcatgtg |
100 |
Q |
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| T |
47073140 |
atctaaaactcattacccaaataagcaaatgctcaaatcatatgtgttgattagtgttgaacttataaattacaatgtttaaaaatactcaaatcatgtg |
47073041 |
T |
|
| Q |
101 |
ggttgacatggattaaacttcaaaattaaaatgtttattcgaactagtaaaacccgtgaaattatacatactaccatagagatttgaaaggaactaca |
198 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47073040 |
ggttgacatggattaaacttgaaaattaaaatgttcattcgaactagtaaaacccgtgaaattatacatactaccatagagatttgaaaggaactaca |
47072943 |
T |
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