View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_63 (Length: 209)
Name: NF17972_high_63
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_63 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 11686481 - 11686307
Alignment:
| Q |
17 |
agattgagctgcatcgaccacggggtaaaactgccaagtatctattgattcaggttgttaaatgtaacttttatatgatgaataaaatccctgacatgca |
116 |
Q |
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| T |
11686481 |
agattgagctgcatcgaccacggggtaaaactgccaagtatctattgattcaggttgttaaatgtaacttttatatgatgaataaaatccctgacatgca |
11686382 |
T |
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| Q |
117 |
aagctttttcgtttcattaatacgtgatatatctcgtttatgcttcatgaactgtggtagatgttttcacaattt |
191 |
Q |
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| T |
11686381 |
aagctttttcgtttcattaatgcgtgctatatctcatttatgcttcatgaactgtggtagatgttttcacaattt |
11686307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 11690493 - 11690319
Alignment:
| Q |
17 |
agattgagctgcatcgaccacggggtaaaactgccaagtatctattgattcaggttgttaaatgtaacttttatatgatgaataaaatccctgacatgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11690493 |
agattgagctgcatcgaccacggggtaaaactgccaagtatctattgattcaggttgttaaatgtaacttttatatgatgaataaaatccctgacatgca |
11690394 |
T |
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| Q |
117 |
aagctttttcgtttcattaatacgtgatatatctcgtttatgcttcatgaactgtggtagatgttttcacaattt |
191 |
Q |
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| T |
11690393 |
aagctttttcgtttcattaatgcgtgctatatctcatttatgcttcatgaactgtggtagatgttttcacaattt |
11690319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 11635320 - 11635382
Alignment:
| Q |
17 |
agattgagctgcatcgaccacggggtaaaactgccaagtatctattgattcaggttgttaaat |
79 |
Q |
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| T |
11635320 |
agattgagctgcatcaaccacagggtaaaactgcaaagtatctattgattcaggttgttaaat |
11635382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 11627541 - 11627601
Alignment:
| Q |
17 |
agattgagctgcatcgaccacggggtaaaactgccaagtatctattgattcaggttgttaa |
77 |
Q |
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||||||||||||||| ||||||| | |||||| | |||||||||||||||||||||||||| |
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| T |
11627541 |
agattgagctgcatcaaccacggagcaaaactacaaagtatctattgattcaggttgttaa |
11627601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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