View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_10 (Length: 466)
Name: NF17972_low_10
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 116 - 455
Target Start/End: Complemental strand, 5776897 - 5776558
Alignment:
| Q |
116 |
ggatatagttggtggagaatttggctgaggttgttgaacatggaaacccggatcagcaatcagatgcattggtatgactttttctatgtaacactcacac |
215 |
Q |
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| T |
5776897 |
ggatatagttggtggagaatttggctgaggttgttgaacatggaaacccggatcagcaatcagatgcattggtatgactttttctatgtaacactcacac |
5776798 |
T |
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| Q |
216 |
tttagatacgacacccacacatgtgattaagttgaatgaatttatttaatcaatatgnnnnnnnacgggtgtcagagtgtagtgtcatgtctgattcata |
315 |
Q |
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| T |
5776797 |
ttatgatacgacacccacacatgtgattaagttgaattaatttatttaatcaatatttttttttacgggtgtcagagtgtagtgtcatgtctgattcata |
5776698 |
T |
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| Q |
316 |
aggctttttattaattcgtctcatggttatttatttgaatttgaatacattactcattatgttaattttgttggttgaagatcactgaattgagcaatca |
415 |
Q |
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| T |
5776697 |
aggctttttattaattcgtctcatggttatttatttgaatttgaatacattactcattatgttaattttgttggttgaagatcactgaattgagcaatca |
5776598 |
T |
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| Q |
416 |
ttttgagaagtgtcagcagctgttaaactcaatctctgct |
455 |
Q |
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| T |
5776597 |
ttttgagaagtgtcagcagctgttaaactcaatctctgct |
5776558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5777012 - 5776960
Alignment:
| Q |
1 |
cactcgcttctcactttcatctcttaaatgcatgttaaccccttcaaaaaccc |
53 |
Q |
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| T |
5777012 |
cactcgcttctcactttcatctcttaaatgtatgttaaccccttcaaaaaccc |
5776960 |
T |
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