View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_16 (Length: 430)
Name: NF17972_low_16
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 42453249 - 42452832
Alignment:
| Q |
1 |
atcctcgaaatgttgtggaaaaagcattggcactgtgtactttttgtacaaattagctttagaagggctagtaaacttgaaagacaattgaatttccccc |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453249 |
atcctcgaaatgttgtggaaaaagcattggcattgtgtactttttatacaaattagctttagaagggctagtaaacttgaaagacaattgaatttccccc |
42453150 |
T |
|
| Q |
101 |
atcttcttcagcccagaaggttgaagttgaacaagaggataagaataattgtaaacggtgttgatttccatttctgatagactgattctcaccttcccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453149 |
atcttcttcagcccagaaggttgaagttgaacaagaggataagaataattgtaaacggtgttgatttccatttctgatagactgattctcaccttcccta |
42453050 |
T |
|
| Q |
201 |
tccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaacacagaaataatgaaaaatgtagatggatcatagaccttcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453049 |
tccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaacacagaaataatgaaaaatgtagatggatcatagaccttcca |
42452950 |
T |
|
| Q |
301 |
agagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacacaataggcatcggtgcga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42452949 |
agagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacacaataggcatcggtgcga |
42452850 |
T |
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| Q |
401 |
ccttgaggtttcatctct |
418 |
Q |
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|||||||||||||||||| |
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| T |
42452849 |
ccttgaggtttcatctct |
42452832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 27253643 - 27253755
Alignment:
| Q |
284 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
383 |
Q |
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|||||||| || | ||||| ||||||||||||||| |||| |||||||||| ||||| ||| |||| | |||||||| || ||||| |||||||||| |
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| T |
27253643 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagactatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
27253742 |
T |
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| Q |
384 |
aataggcatcggt |
396 |
Q |
| |
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|||| || ||||| |
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| T |
27253743 |
aatatgcgtcggt |
27253755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 21197801 - 21197913
Alignment:
| Q |
284 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
383 |
Q |
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|||||||| || | ||||| ||||||||||||||| |||| |||||| ||| ||||| ||| |||| | |||||||| || ||||| |||||||||| |
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| T |
21197801 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagaatatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
21197900 |
T |
|
| Q |
384 |
aataggcatcggt |
396 |
Q |
| |
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|||| || ||||| |
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| T |
21197901 |
aatatgcgtcggt |
21197913 |
T |
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