View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_20 (Length: 419)
Name: NF17972_low_20
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 21700930 - 21700543
Alignment:
| Q |
16 |
tgtgctgttgtcatgtttgtgaatacccaccctataatatatacttgtcttattagacaatgcttggaatttcagtttcaagtttcaaatgcttggaatt |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
21700930 |
tgtgatgttgtcatgtttgtgaatacccaccctataatatatacttgtcttattagataaagcttggaatttcagtttcaagtttcaaatgcttggaatt |
21700831 |
T |
|
| Q |
116 |
ctcatgtataaggttcaggcaaaatgaattatgaggccaaagagtattatataatttatttgttttgctcctttacgtgtgactgtggtatgatgagagc |
215 |
Q |
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| T |
21700830 |
ctcatgtataaggttcaggcaaaatgaattatgagaccaaagagtatcatataatttatttgttttgctcctttatgtgtgactgtggtatgatgagagc |
21700731 |
T |
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| Q |
216 |
acaaagctacaaaattgactcttatatattgggaatgtaatgtaacattnnnnnnnnnntcttgttgagtgagataagaattaatcaaaaattaacttac |
315 |
Q |
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| T |
21700730 |
acaaagctacaaaattgactcttatatattggggatgtaatgtaacattaaaaaaaaaatcttgttgagtgagataagaattaatcaaaaattaacttac |
21700631 |
T |
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| Q |
316 |
agtcaaaggggttgtgcatggttagctacctttcaaacctatgaatcaaacaaaataatatgattcaaatggtttctgtcattatagt |
403 |
Q |
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| T |
21700630 |
agtcaaaggagttgtgcatggtttgctacctttcaaacctatgaatcaaacaaaataatatgattcaaatggtttctgtcgttatagt |
21700543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 367
Target Start/End: Original strand, 43953740 - 43953963
Alignment:
| Q |
138 |
aatgaattatgaggccaaagagtattatataatttatttgttttgctcctttacgtgtgactg------tggtatgatgagagcacaaagctacaaaatt |
231 |
Q |
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| T |
43953740 |
aatgaattatgaggccaaagggtataa---aatttatttgttttgctactttatatgtgactggtagtgtggtatgatgagagcacaaagctacaaaatt |
43953836 |
T |
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| Q |
232 |
gactcttatatattgggaatgtaatgtaacattnnnnnnnnnntcttgttgagtgagataagaattaatcaaaaattaacttacagtcaaaggggttgtg |
331 |
Q |
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||||| ||||||| || ||||||||||||||| ||||||||||||| |||||||| ||| ||| |||| |||||||||||| ||| |
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| T |
43953837 |
gactcatatatat--gggatgtaatgtaacattcaacaaattttcttgttgagtgaaataagaatgaataaaa----aactaacagtcaaaggg---gtg |
43953927 |
T |
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| Q |
332 |
catggttagctacctttcaaacctatgaatcaaaca |
367 |
Q |
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| T |
43953928 |
catgattagctacctttcaaacctatgaaccaaaca |
43953963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 15716426 - 15716311
Alignment:
| Q |
123 |
ataaggttcaggcaaaatgaattatgaggccaaagagtattatataatttatttgttttgctcctttacgtgtgactgtggtatgatgagagcacaaagc |
222 |
Q |
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|||||||||||||| |||||||| |||||||||| |||||| | |||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
15716426 |
ataaggttcaggcagaatgaatt--gaggccaaagggtattaaa--atttatttgttttgctactttatgcgtgactgtggtatgatgagagcacaaagc |
15716331 |
T |
|
| Q |
223 |
tacaaaattgactcttatat |
242 |
Q |
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|||||||||||||||||||| |
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| T |
15716330 |
tacaaaattgactcttatat |
15716311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 21711525 - 21711455
Alignment:
| Q |
26 |
tcatgtttgtgaatacccaccctataatatatacttgtcttattagacaatgcttggaatttcagtttcaa |
96 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |
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| T |
21711525 |
tcatgtctatgaatacccaccctataatatatacttgtcttattagataaagcttggaattgaagtttcaa |
21711455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 21630964 - 21630919
Alignment:
| Q |
23 |
ttgtcatgtttgtgaatacccaccctataatatatacttgtcttat |
68 |
Q |
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||||||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
21630964 |
ttgtcatgtctatgaatacccaacctataatatatacttgtcttat |
21630919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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