View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_21 (Length: 416)
Name: NF17972_low_21
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 37028075 - 37028480
Alignment:
| Q |
1 |
cttccagaaaattcagttgctaaggatgtgatcttgattgcaaaaatggcatttgcttgcttgagtgggaatccacattctcgaccaactatgaaacaag |
100 |
Q |
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| T |
37028075 |
cttccagaaaattcagttgctaaggatgtgatcttgattgcaaaaatggcatttgcttgcttgagtgggaatccacattctcgaccaactatgaaacaag |
37028174 |
T |
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| Q |
101 |
cgtataacatgtttgttatgtcaaaatcaccatcaatggagacattccgcaccatcactcttggtcaacttctagattagtgaacaatgaagttggttta |
200 |
Q |
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| T |
37028175 |
cgtataacatgtttgttatgtcaaaatcaccatcaatggagacattctgcaccatcactcttggtcaacttctagattagtgaacaatgaatttggttta |
37028274 |
T |
|
| Q |
201 |
cttgtgttgcaagcatcttttttgtgctactaataatgtgtttatggggttttgtcatctttataggctagtcttaaggttttaattacctaagaaaata |
300 |
Q |
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| T |
37028275 |
cttgtgttgcaagcatcttttttgtgctactaataatgtgtgtatggggttttgtcatctttataggctagtcttaaggttttaattacctaagaaaata |
37028374 |
T |
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| Q |
301 |
agatttatatcttgtgtgttgtaacttttaagggtgtatttgagtaaacaacttagtttaattaataattggctattatatagtgtccacatataaggca |
400 |
Q |
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| T |
37028375 |
agatttatatcttgtgtgttgtaacttttaagggtgtatttgagtaaacaacttagtttaattaataattggctattatatagtgtccacatatacggca |
37028474 |
T |
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| Q |
401 |
tctgtg |
406 |
Q |
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| T |
37028475 |
tctgtg |
37028480 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 31217013 - 31217057
Alignment:
| Q |
31 |
atcttgattgcaaaaatggcatttgcttgcttgagtgggaatcca |
75 |
Q |
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| T |
31217013 |
atcttgattacaaaattggcattttcttgcttgagtgagaatcca |
31217057 |
T |
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