View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_low_22 (Length: 415)

Name: NF17972_low_22
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17972_low_22
NF17972_low_22
[»] chr6 (3 HSPs)
chr6 (70-393)||(19123461-19123783)
chr6 (1-80)||(19109222-19109301)
chr6 (1-80)||(19124509-19124588)
[»] chr5 (1 HSPs)
chr5 (70-393)||(36753127-36753449)
[»] chr3 (1 HSPs)
chr3 (100-353)||(54292881-54293133)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 70 - 393
Target Start/End: Complemental strand, 19123783 - 19123461
Alignment:
Q  70 gattcacattcggcatcaactggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtgggtcctaccaacaacttgat 169  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19123783 gattcacattcagcatcaacgggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgat 19123684  T
Q  170 gagaaaccctcttccaatcatccccaaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcnnnnnnnnnnctcctcccttatct 269  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| |||||||    
T  19123683 gagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattc-tttttttgtctcctcgcttatct 19123585  T
Q  270 ccactctcttgaattatgtattactcataccaattcgatagtttccacaaataaaacaccttgcacacaacttcatattattcttatcacatgcagagct 369  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  19123584 ccactctcttgaattctgtattactcataccaattcgatagtttccacaaataaaacacctcacacacaacgtcatattattcttatcacatgcagagct 19123485  T
Q  370 agccatgcaaccagtgcagattct 393  Q
    ||||||||| ||| | ||||||||    
T  19123484 agccatgcagccacttcagattct 19123461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19109301 - 19109222
Alignment:
Q  1 atgaaccgattataagcatgtagactcgatctaatattaaataaacgatcaaaattgacgatttaacaagattcacattc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19109301 atgaaccgattataagcatgtagactcgatctaatattaaataaacgatcaaaattgacgatttaacaagattcatattc 19109222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19124588 - 19124509
Alignment:
Q  1 atgaaccgattataagcatgtagactcgatctaatattaaataaacgatcaaaattgacgatttaacaagattcacattc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19124588 atgaaccgattataagcatgtagactcgatctaatattaaataaacgatcaaaattgacgatttaacaagattcatattc 19124509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 70 - 393
Target Start/End: Complemental strand, 36753449 - 36753127
Alignment:
Q  70 gattcacattcggcatcaactggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtgggtcctaccaacaacttgat 169  Q
    ||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36753449 gattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgat 36753350  T
Q  170 gagaaaccctcttccaatcatccccaaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcnnnnnnnnnnctcctcccttatct 269  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| |||||||    
T  36753349 gagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattc-attttttgtctcctcacttatct 36753251  T
Q  270 ccactctcttgaattatgtattactcataccaattcgatagtttccacaaataaaacaccttgcacacaacttcatattattcttatcacatgcagagct 369  Q
    |||||||||| |||| ||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||| |||||||||||||||| ||| |||     
T  36753250 ccactctcttaaattttgtattactcataccaattcgatagttcccacgaatgaaacacctcgcacacaacttcctattattcttatcacaggcaaagca 36753151  T
Q  370 agccatgcaaccagtgcagattct 393  Q
    | |||||||  || ||||||||||    
T  36753150 atccatgcagacactgcagattct 36753127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 100 - 353
Target Start/End: Original strand, 54292881 - 54293133
Alignment:
Q  100 aactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtgggtcctaccaacaacttgatgagaaaccctcttccaatcatccccaaaat 199  Q
    |||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| || ||||    
T  54292881 aactgatcaccaaaaggaagctctaaaaaacgagcaacgcattccttgtcggtcctaccaacaacttgatgagcaaccctcttccaatcatcaccgaaat 54292980  T
Q  200 ttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcnnnnnnnnnnctcctcccttatctccactctcttgaattatgtattactcatac 299  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||          |||||| |||||||||||||||||||||| ||||||||||||||    
T  54292981 tcgtaatagcttcaagaagattcagtgtttccttctcagtccattc-atttttcgtctcctcgcttatctccactctcttgaattctgtattactcatac 54293079  T
Q  300 caattcgatagtttccacaaataaaacaccttgcacacaacttcatattattct 353  Q
    |||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||    
T  54293080 caattcgataatttccacgaataaaacacctcgcacacaacgtcatattattct 54293133  T

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