View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_23 (Length: 409)
Name: NF17972_low_23
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 42 - 391
Target Start/End: Complemental strand, 53562552 - 53562207
Alignment:
| Q |
42 |
cacagaaagcataagagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacaacctcaatgaacacagccagacaccacgcagcagcagc |
141 |
Q |
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| T |
53562552 |
cacagaaagcataagagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacagcctcaatgaacacagccagacaccacgcagcagcagc |
53562453 |
T |
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| Q |
142 |
tctcccaaacaaaacaacctcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactcca |
241 |
Q |
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| T |
53562452 |
tctcccaaacaaaacaacctcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactcca |
53562353 |
T |
|
| Q |
242 |
cctccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaata |
341 |
Q |
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| T |
53562352 |
cctccaagacaaaaccttgac----tgcaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaata |
53562257 |
T |
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| Q |
342 |
acagcatgccaaataattccaacacctttacggatcttattatttaaaac |
391 |
Q |
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| T |
53562256 |
acagcatgccaaataattctaacacctttacgggtcttattatttaaaac |
53562207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 357
Target Start/End: Original strand, 34821223 - 34821420
Alignment:
| Q |
161 |
tcaccgcatcaaacag-tccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaacctt |
259 |
Q |
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| T |
34821223 |
tcaccgcatcaaacaaatcctttggattccagctccattcgtaaaacaaacaagacggcacatccaatcgacctaaacaccacctccaccacaaaacctt |
34821322 |
T |
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| Q |
260 |
gacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataa |
357 |
Q |
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| T |
34821323 |
tattgattccaacagtgcctcaaaatctaaaacagcattgttaaaaataatatcattcctcgctttccatatgctccaaatcgcggcgtgccaaataa |
34821420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 161 - 355
Target Start/End: Complemental strand, 4903993 - 4903799
Alignment:
| Q |
161 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
260 |
Q |
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| T |
4903993 |
tcaccgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacacctta |
4903894 |
T |
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| Q |
261 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaat |
355 |
Q |
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| T |
4903893 |
acagattccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaat |
4903799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 355
Target Start/End: Original strand, 22153564 - 22153758
Alignment:
| Q |
161 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
260 |
Q |
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|||||||| |||||| |||| |||||||| ||||||| || |||||| |||| || | || || || |||||| |||||||||||||| ||||| |
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| T |
22153564 |
tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta |
22153663 |
T |
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| Q |
261 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaat |
355 |
Q |
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| T |
22153664 |
aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaat |
22153758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 355
Target Start/End: Original strand, 22209479 - 22209673
Alignment:
| Q |
161 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
260 |
Q |
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|||||||| |||||| |||| |||||||| ||||||| || |||||| |||| || | || || || |||||| |||||||||||||| ||||| |
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| T |
22209479 |
tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta |
22209578 |
T |
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| Q |
261 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaat |
355 |
Q |
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| T |
22209579 |
aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaat |
22209673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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