View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_25 (Length: 403)
Name: NF17972_low_25
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 4665325 - 4664935
Alignment:
| Q |
13 |
cagagacactaaatttttgtttgctgaattagagactaaattaagatcaaatttttctcgtgaaacactttggtagctttaagcaagttttgacgtcaaa |
112 |
Q |
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| T |
4665325 |
cagagacactaaatttttgtttgctgtattagagactaaattaagatcaaatttttttcgtgaaacactttggtagctttaagcaagttttgacgtcaaa |
4665226 |
T |
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| Q |
113 |
ttttctttggtagcttttaacaagttatacaaatcattcctgaaaaagaagtgataccatataattttgcattgtcatattgaataggaacgggaaaaga |
212 |
Q |
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| T |
4665225 |
ttttttttggtagcttttaacaagttatacaaatcattcctgaaaaagaagtgataccatataattttgcattgccatattgaataggaacgggaaaaga |
4665126 |
T |
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| Q |
213 |
aagacaaaagaaatatgacgagatttagtaatcaaatggtgtaaaataagtttgtgcataatacagtaccggtttgtttatacacattagataaaaccat |
312 |
Q |
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| T |
4665125 |
aagacaaaagaaatatgacgagattaagtaatcaaatggtgtaaaataagtttgtgcataatacagtaccggtttgtttatacacattagataaagccat |
4665026 |
T |
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| Q |
313 |
ggaaataaactaaccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattattcttgcatgaggattc |
403 |
Q |
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| T |
4665025 |
gaaaataaactaaccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattattcttgcatgaggattc |
4664935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 4668218 - 4668103
Alignment:
| Q |
288 |
gtttatacacattagataaaaccatggaaataaactaaccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattat |
387 |
Q |
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| T |
4668218 |
gtttatgcacattagacaaagccacggaaataaactaaccgtagtgtcttggtgaatggaagaaacgctttgctgcaccaaaatagtcagcatacattat |
4668119 |
T |
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| Q |
388 |
tcttgcatgaggattc |
403 |
Q |
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| T |
4668118 |
tcttgcatgaggattc |
4668103 |
T |
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