View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_29 (Length: 368)
Name: NF17972_low_29
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_29 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 60036 - 59705
Alignment:
| Q |
19 |
aagatgacccaaatcatgtttgagactttcaatgcccctgctatgtatgtggccattcaggccgttctttcactctacgccagtggtcgtacaaccggta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60036 |
aagatgacccaaatcatgtttgagactttcaatgcccctgctatgtatgtggccattcaggccgttctttcactctacgccagtggtcgtacaaccggta |
59937 |
T |
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| Q |
119 |
atcatttcatgatattattatcgtatgattgggtttaattggcacgcttgtaccataagctagcttatccatggagcttttagattgagatgacaatatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59936 |
atcatttcatgatattattatcgtatgattgggtttaattggcacgcttgtaccataagctagcttatccatggagcttttagattgagatgacaatatg |
59837 |
T |
|
| Q |
219 |
aggcaacttgtactttgtgtgagctggcatatacctatacttttacacaaacagacctttatttgtggtagtaaagtttagagttgttcaattttctcat |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59836 |
aggaaacttgtactttgtgtgagctggcatatacctatacttttacacaaacagacctttatttgtggtagtaaagtttagagttgttcaattttctcat |
59737 |
T |
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| Q |
319 |
caaccaagaggcataactattccttatattct |
350 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
59736 |
caaccaagaggcataactattccttatattct |
59705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 8688963 - 8689063
Alignment:
| Q |
19 |
aagatgacccaaatcatgtttgagactttcaatgcccctgctatgtatgtggccattcaggccgttctttcactctacgccagtggtcgtacaaccggta |
118 |
Q |
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| T |
8688963 |
aagatgactcaaatcatgtttgagacttttaatacccctgctatgtatgttgctattcaggccgttctttcactgtacgccagtggtcgtaccaccggta |
8689062 |
T |
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| Q |
119 |
a |
119 |
Q |
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| T |
8689063 |
a |
8689063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 37051217 - 37051120
Alignment:
| Q |
22 |
atgacccaaatcatgtttgagactttcaatgcccctgctatgtatgtggccattcaggccgttctttcactctacgccagtggtcgtacaaccggtaa |
119 |
Q |
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| T |
37051217 |
atgactcagatcatgtttgagacattcaatactcctgctatgtatgttgctattcaagctgtgctttccctttatgcgagtggtcgtacaactggtaa |
37051120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 43647671 - 43647576
Alignment:
| Q |
18 |
aaagatgacccaaatcatgtttgagactttcaatgcccctgctatgtatgtggccattcaggccgttctttcactctacgccagtggtcgtacaac |
113 |
Q |
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| T |
43647671 |
aaagatgacccaaatcatgttcgagaccttcaatgtgcctgccatgtatgtggccatccaggctgtcctctccctctatgcaagtggtcgtacaac |
43647576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 41387775 - 41387870
Alignment:
| Q |
22 |
atgacccaaatcatgtttgagactttcaatgcccctgctatgtatgtggccattcaggccgttctttcactctacgccagtggtcgtacaaccggt |
117 |
Q |
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| T |
41387775 |
atgacacaaattatgtttgagacattcaacacacctgctatgtatgttgctattcaggccgttctatcgctctatgccagtggtcgaacaaccggt |
41387870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 67324 - 67409
Alignment:
| Q |
34 |
atgtttgagactttcaatgcccctgctatgtatgtggccattcaggccgttctttcactctacgccagtggtcgtacaaccggtaa |
119 |
Q |
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| T |
67324 |
atgtttgagaccttcaatgctccagctatgtatgttgccattcaggctgtgctttcgctttatgctagtggccgtacaaccggtaa |
67409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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