View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_3 (Length: 733)
Name: NF17972_low_3
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 33252214 - 33251718
Alignment:
| Q |
1 |
gatgaaatgcagctgaatatttatttgatcaaattcagaattttaatttgttttgtgtgtttgtgtgttggtagctaggcaaataggatttgaagatgca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252214 |
gatgaaatgcagctgaatatttatttgatcaaattcagaattttaattttttttgtgtgtttgtgtgttggtagctaggcaaataggatttgaagatgca |
33252115 |
T |
|
| Q |
101 |
agtgaggtgccagaattatgcaaacttgcccaagaatatctacaaaaatccaaaggatgtgatcaaagcatctttgaatatcttggcaatgaaaaggact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252114 |
agtgaggtgccagaattatgcaaacttgcccaagaatatctacaaaaatccaaaggatgtgatcaaagcatctttgaatatcttggcaatgaaaaggact |
33252015 |
T |
|
| Q |
201 |
atgaatctctctatgtcaagttggttaatgagtttgagaaatgcatcctcagttattttgcatttcattggaaacaagctccatttgttattagtcaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252014 |
atgaatctctctatgtcaagttggttaatgagtttgagaaatgcatcctcagttattttgcatttcattggaaacaagctccatttgttattagtcaggt |
33251915 |
T |
|
| Q |
301 |
tcattctccatttattcttttttatttgttatgttatgttctgatacatatttttctcttcaattaaggattgagtatgtcttttgccnnnnnnnnttat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
33251914 |
tcattctccatttattcttttttatttgttatgttatgttctgatacatatttttctcttcaattaagtattgagtatgtcttttgccaaaaaatattat |
33251815 |
T |
|
| Q |
401 |
tgagtatctctttcgttgaccaatagatactgaaaactgagtctcagcttaaaacgaagctgaaagaaattctattggcagctacaaggtaacttgc |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33251814 |
tgagtatctctttcgttgaccaatagatactgaaaactgagtctcagcacaaaacgaagctgaaagaaattctattggcagctacaaggtaacttgc |
33251718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 33272386 - 33271890
Alignment:
| Q |
1 |
gatgaaatgcagctgaatatttatttgatcaaattcagaattttaatttgttttgtgtgtttgtgtgttggtagctaggcaaataggatttgaagatgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33272386 |
gatgaaatgcagctgaatatttatttgatcaaattcagaattttaattttttttgtgtgtttgtgtgttggtagctaggcaaataggatttgaagatgca |
33272287 |
T |
|
| Q |
101 |
agtgaggtgccagaattatgcaaacttgcccaagaatatctacaaaaatccaaaggatgtgatcaaagcatctttgaatatcttggcaatgaaaaggact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33272286 |
agtgaggtgccagaattatgcaaacttgcccaagaatatctacaaaaatccaaaggatgtgatcaaagcatctttgaatatcttggcaatgaaaaggact |
33272187 |
T |
|
| Q |
201 |
atgaatctctctatgtcaagttggttaatgagtttgagaaatgcatcctcagttattttgcatttcattggaaacaagctccatttgttattagtcaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33272186 |
atgaatctctctatgtcaagttggttaatgagtttgagaaatgcatcctcagttattttgcatttcattggaaacaagctccatttgttattagtcaggt |
33272087 |
T |
|
| Q |
301 |
tcattctccatttattcttttttatttgttatgttatgttctgatacatatttttctcttcaattaaggattgagtatgtcttttgccnnnnnnnnttat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
33272086 |
tcattctccatttattcttttttatttgttatgttatgttctgatacatatttttctcttcaattaagtattgagtatgtcttttgccaaaaaatattat |
33271987 |
T |
|
| Q |
401 |
tgagtatctctttcgttgaccaatagatactgaaaactgagtctcagcttaaaacgaagctgaaagaaattctattggcagctacaaggtaacttgc |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33271986 |
tgagtatctctttcgttgaccaatagatactgaaaactgagtctcagcacaaaacgaagctgaaagaaattctattggcagctacaaggtaacttgc |
33271890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 28 - 311
Target Start/End: Complemental strand, 33303988 - 33303705
Alignment:
| Q |
28 |
atcaaattcagaattttaatttgttttgtgtgtttgtgtgttggtagctaggcaaataggatttgaagatgcaagtgaggtgccagaattatgcaaactt |
127 |
Q |
| |
|
|||||||||| |||||||||| ||| | ||| | |||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
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| T |
33303988 |
atcaaattcaaaattttaattactttggcttgtatttgtgttggcagctaggcaaataggatttgaagatgcaagtgaggtcccaaagttatgcaaactt |
33303889 |
T |
|
| Q |
128 |
gcccaagaatatctacaaaaatccaaaggatgtgatcaaagcatctttgaatatcttggcaatgaaaaggactatgaatctctctatgtcaagttggtta |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| || |||||||| ||||||||| |||| ||||||||||||||| || |||||| |
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| T |
33303888 |
gcccaagaatatctacaaaaatccaaagcgtgtgaccaaagcatctatgcatatcttgccaatgaaaatgactctgaatctctctatgttaaattggttg |
33303789 |
T |
|
| Q |
228 |
atgagtttgagaaatgcatcctcagttattttgcatttcattggaaacaagctccatttgttattagtcaggttcattctccat |
311 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
33303788 |
atgagttcgagagatgcatcctcagttattttgcatttcattggaaacaagctccatatgttgttagtcaggttcattctccat |
33303705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 576 - 710
Target Start/End: Complemental strand, 33251674 - 33251540
Alignment:
| Q |
576 |
atcattatagagtaaaaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaagg |
675 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33251674 |
atcattatagagttaaaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaagg |
33251575 |
T |
|
| Q |
676 |
tttgagagcgtaaccaagaatctgaaggtgacaag |
710 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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|
| T |
33251574 |
tttgagagagtaaccaagaatctgaaggtgacaag |
33251540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 576 - 710
Target Start/End: Complemental strand, 33271846 - 33271712
Alignment:
| Q |
576 |
atcattatagagtaaaaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaagg |
675 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33271846 |
atcattatagagttaaaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaagg |
33271747 |
T |
|
| Q |
676 |
tttgagagcgtaaccaagaatctgaaggtgacaag |
710 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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|
| T |
33271746 |
tttgagagagtaaccaagaatctgaaggtgacaag |
33271712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 591 - 710
Target Start/End: Complemental strand, 33303496 - 33303377
Alignment:
| Q |
591 |
aaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaaggtttgagagcgtaacc |
690 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
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|
| T |
33303496 |
aaacacttcaaaggaactaacaagtttttaatatagggggaaatgacactaagtaagtgatgtatatgtctataggaaacaaaggtttgagagagtaacc |
33303397 |
T |
|
| Q |
691 |
aagaatctgaaggtgacaag |
710 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33303396 |
aagaatctgaaggtgacaag |
33303377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 33312373 - 33312301
Alignment:
| Q |
228 |
atgagtttgagaaatgcatcctcagttattttgcatttcattggaaacaagctccatttgttattagtcaggt |
300 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||| |||||||||| |||||| ||| | ||||||||||||| |
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|
| T |
33312373 |
atgagtttgaaagatgtatcctcagttattttgcttttcattggagccaagcttcatatattattagtcaggt |
33312301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 497
Target Start/End: Complemental strand, 33303593 - 33303555
Alignment:
| Q |
459 |
gctgaaagaaattctattggcagctacaaggtaacttgc |
497 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
33303593 |
gctgaaagaaattgttttggcagctacaaggtaacttgc |
33303555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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