View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_33 (Length: 345)
Name: NF17972_low_33
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 5777275 - 5777315
Alignment:
| Q |
288 |
catcgtccatgttcctccgggagaagagtaatgttccattg |
328 |
Q |
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| T |
5777275 |
catcgtccatgttcctccgggagaagagtaatgttccattg |
5777315 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 5776990 - 5777025
Alignment:
| Q |
9 |
gagatgaaagtgagaagcgagtgattgatgaagatt |
44 |
Q |
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| T |
5776990 |
gagatgaaagtgagaagcgagtgattgatgaagatt |
5777025 |
T |
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