View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17972_low_34 (Length: 344)
Name: NF17972_low_34
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 2872144 - 2872470
Alignment:
| Q |
1 |
agtgtcggttcacaattacacaaattgaactgtgttgctcgnnnnnnnn-aaacattgatcataattttctctctttcaccatttcttttcttcctatct |
99 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
2872144 |
agtgtcggttcacaattacacgaattgaaccgtgttgctcgtttttttttaaacattgatcataattttctcactttcaacatttcttttcttcctatct |
2872243 |
T |
|
| Q |
100 |
tttgctcccttacatgaggacatcattttcaattactcaataatctcatatcacttttatggnnnnnnnnnnnnngtcatgtgtttgttaatacatatat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2872244 |
tttgctcccttacatgaggacatcattttcaattactcaataatctcatatcacttttatgggttttttattt--gtcatgtgtttgttaatacatatat |
2872341 |
T |
|
| Q |
200 |
ttttcttttagagttgggattgagattccaacaattgaagttcgttttgagcacctaactattgaggcagaggcttatgtgggaagtagagcattaccta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2872342 |
ttttcttttagagttgggattgagattccaacaattgaagttcgttttgagcacctaactattgaggcagaggcttatgtgggaagtagagcattaccta |
2872441 |
T |
|
| Q |
300 |
gtttcacaaactttacaattggtgcagtg |
328 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
2872442 |
gtttcacaaactttactattggtgcagtg |
2872470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 2882561 - 2882642
Alignment:
| Q |
202 |
ttcttttagagttgggattgagattccaacaattgaagttcgttttgagcacctaactattgaggcagaggcttatgtggga |
283 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | | ||||||||||| | |||||||||| |||| ||||||| |
|
|
| T |
2882561 |
ttcttttagagttgggattgagattccagcaattgaagttagatatgagcacctaaatgttgaggcagaagcttttgtggga |
2882642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 2902452 - 2902413
Alignment:
| Q |
202 |
ttcttttagagttgggattgagattccaacaattgaagtt |
241 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
2902452 |
ttcttttagagttggtattgagattccaacaatagaagtt |
2902413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University