View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_low_36 (Length: 329)

Name: NF17972_low_36
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17972_low_36
NF17972_low_36
[»] chr2 (1 HSPs)
chr2 (3-317)||(3284777-3285091)
[»] chr8 (1 HSPs)
chr8 (174-236)||(3134205-3134267)
[»] chr5 (3 HSPs)
chr5 (171-236)||(17368661-17368726)
chr5 (171-219)||(40205094-40205142)
chr5 (148-221)||(18543198-18543266)
[»] chr7 (3 HSPs)
chr7 (171-222)||(24363621-24363672)
chr7 (171-219)||(39505958-39506006)
chr7 (174-238)||(46056033-46056097)
[»] chr3 (2 HSPs)
chr3 (171-226)||(44295524-44295579)
chr3 (171-236)||(36646402-36646467)
[»] chr6 (2 HSPs)
chr6 (261-303)||(33890664-33890706)
chr6 (264-312)||(10657125-10657173)
[»] chr4 (1 HSPs)
chr4 (171-221)||(7694030-7694080)
[»] chr1 (2 HSPs)
chr1 (261-302)||(10199538-10199579)
chr1 (171-219)||(30257685-30257733)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 3284777 - 3285091
Alignment:
Q  3 agagtgagtaccatgtgatctctacataaaaatcagaagaccacatagttcactcgtacgaactctttggcttgacttatttaaacttacgtatcaacat 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||||||||    
T  3284777 agagagagtaccatgtgatctctacataaaaatcagaagaccacatagttcattcgtacgacctctttggattgacttatttaaacttatgtatcaacat 3284876  T
Q  103 aaacatttgtgacattatttgagagaattaacgaaaacatttcaagacatgtccatgagatgttttcattcagcttatttctataaactctccgggatat 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3284877 aaacatttgtgacattatttgagagaatttacgaaaacatttcaagacatgtccatgagatgttttcattcagcttatttctataaactctccgggatat 3284976  T
Q  203 attatgaaaacaacttataaattacacgaaaacattaaacgtgtgcggcgtatcatacaagtgtttatgctataagccgcaaaataaggtgtttatccaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3284977 attatgaaaacaacttataaattacacgaaaacattaaacgcgtgcggcgtatcatacaagtgtttatgctataagccgcaaaataaggtgtttatccta 3285076  T
Q  303 aaatgacctaaatga 317  Q
    |||||||||||||||    
T  3285077 aaatgacctaaatga 3285091  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 3134205 - 3134267
Alignment:
Q  174 agcttatttctataaactctccgggatatattatgaaaacaacttataaattacacgaaaaca 236  Q
    ||||||||||||||| |||||| | ||||||| |||||||||||||||| ||| |||||||||    
T  3134205 agcttatttctataagctctccagaatatattttgaaaacaacttataacttatacgaaaaca 3134267  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 17368726 - 17368661
Alignment:
Q  171 ttcagcttatttctataaactctccgggatatattatgaaaacaacttataaattacacgaaaaca 236  Q
    ||||||||||||| |||| ||||||  ||||  |||||||||||||||||| ||||||| ||||||    
T  17368726 ttcagcttatttccataacctctccaagatagcttatgaaaacaacttatagattacacaaaaaca 17368661  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 40205094 - 40205142
Alignment:
Q  171 ttcagcttatttctataaactctccgggatatattatgaaaacaactta 219  Q
    |||||||||||||||||| |||||| |||||  ||||||||||||||||    
T  40205094 ttcagcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 18543198 - 18543266
Alignment:
Q  148 gacatgtccatgagatgttttcattcagcttatttctataaactctccgggatatattatgaaaacaacttata 221  Q
    |||||||||||||| ||||||||    ||||||||| |||| |||||| |||||  ||||||||||||||||||    
T  18543198 gacatgtccatgagttgttttca----gcttatttc-ataagctctccaggatagcttatgaaaacaacttata 18543266  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 24363621 - 24363672
Alignment:
Q  171 ttcagcttatttctataaactctccgggatatattatgaaaacaacttataa 222  Q
    ||||||||||||| |||| |||||| |||||  |||||||||||||||||||    
T  24363621 ttcagcttatttccataacctctccaggatagcttatgaaaacaacttataa 24363672  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 39506006 - 39505958
Alignment:
Q  171 ttcagcttatttctataaactctccgggatatattatgaaaacaactta 219  Q
    ||||||||||||| ||||||||||| | |||  ||||||||||||||||    
T  39506006 ttcagcttatttccataaactctccagaatagcttatgaaaacaactta 39505958  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 46056033 - 46056097
Alignment:
Q  174 agcttatttctataaactctccgggatatattatgaaaacaacttataaattacacgaaaacatt 238  Q
    |||||||||| |||| |||| |||||||  |||||||||||| |||||  |||||| ||||||||    
T  46056033 agcttatttccataagctctacgggatagcttatgaaaacaatttatagcttacacaaaaacatt 46056097  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 44295579 - 44295524
Alignment:
Q  171 ttcagcttatttctataaactctccgggatatattatgaaaacaacttataaatta 226  Q
    ||||||||||||| |||| |||||||  |||| |||||||||||||||||| ||||    
T  44295579 ttcagcttatttccataagctctccgatatatcttatgaaaacaacttatagatta 44295524  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 36646402 - 36646467
Alignment:
Q  171 ttcagcttatttctataaactctccgggatatattatgaaaacaacttataaattacacgaaaaca 236  Q
    |||| |||||||||||||||||||  |||||  |||||||||||| |||||| ||| | |||||||    
T  36646402 ttcatcttatttctataaactctctaggatagcttatgaaaacaagttataacttatatgaaaaca 36646467  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 33890706 - 33890664
Alignment:
Q  261 aagtgtttatgctataagccgcaaaataaggtgtttatccaaa 303  Q
    ||||||||||||||||||| |||||||||| | ||||||||||    
T  33890706 aagtgtttatgctataagctgcaaaataagttatttatccaaa 33890664  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 10657173 - 10657125
Alignment:
Q  264 tgtttatgctataagccgcaaaataaggtgtttatccaaaaatgaccta 312  Q
    ||||||||||||| || |||||||||| ||||||||| || ||||||||    
T  10657173 tgtttatgctatatgctgcaaaataagttgtttatccgaacatgaccta 10657125  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 7694030 - 7694080
Alignment:
Q  171 ttcagcttatttctataaactctccgggatatattatgaaaacaacttata 221  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||| ||||||    
T  7694030 ttcagcttatttccataaactctccaggataacttatgaaaacagcttata 7694080  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 10199538 - 10199579
Alignment:
Q  261 aagtgtttatgctataagccgcaaaataaggtgtttatccaa 302  Q
    ||||||||||||||||||| |||||||||| |||||| ||||    
T  10199538 aagtgtttatgctataagctgcaaaataagttgtttacccaa 10199579  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 30257733 - 30257685
Alignment:
Q  171 ttcagcttatttctataaactctccgggatatattatgaaaacaactta 219  Q
    |||||||||||||||||| | |||| |||||  ||||||||||||||||    
T  30257733 ttcagcttatttctataagccctccaggatagtttatgaaaacaactta 30257685  T

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