View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_37 (Length: 318)
Name: NF17972_low_37
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 24336267 - 24336570
Alignment:
| Q |
1 |
caagttgagtatggaactccaagtattagttctgtgtcaacatggaacagccaaaatgcactcttgaagagtggagtgagaaattctatagggaatagca |
100 |
Q |
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| T |
24336267 |
caagttgagtatggaactccaagtattagctctgtgtcaacatggaacagccaaaatgcactcttgaagagtggagtgagaaattctatagggaatagca |
24336366 |
T |
|
| Q |
101 |
aagaaaaagagcatgctaagagtgttctatcgagtcttcgtctcaaatgttcttgttctgataagaattctgttgatataaatgaccatgcaagtggaat |
200 |
Q |
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| T |
24336367 |
aagaaaaagagcatgctaagagtgttctatcgagtcttcgtctcaaatgctcttgttctgataagaattctgttgatataaatgaccatgcaagtgaaat |
24336466 |
T |
|
| Q |
201 |
cagttttaataacaaaacttctaagtatggtgcagttcaaggtaaaacaacaccgaaaaaagtgtttaatcttggtcttgatgatgatctttcagttaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24336467 |
cagttttaataacaaaacttctaagtatggtgcagttcaaggtaaaacaacgccgaaaaaagtgtttaatcttggtcttgatgatgatctttcagtaaga |
24336566 |
T |
|
| Q |
301 |
ataa |
304 |
Q |
| |
|
|||| |
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| T |
24336567 |
ataa |
24336570 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 17745412 - 17745353
Alignment:
| Q |
144 |
caaatgttcttgttctgataagaattctgttgatataaatgaccatgcaagtggaatcag |
203 |
Q |
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| T |
17745412 |
caaatgctcttgttatgataagaattctgttgatgtaagtgatcatgcaggtgaaatcag |
17745353 |
T |
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