View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_41 (Length: 292)
Name: NF17972_low_41
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 47073530 - 47073256
Alignment:
| Q |
1 |
aatatgaccattaggtcacgcgttcttcgccgttgattataagtatattttagattataataatatatatccacttgcttgataaaaacaaaatcattta |
100 |
Q |
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| T |
47073530 |
aatatgaccgttaggtcacgcgttcttcgccgttgactataagtatattttagattataataatatatgtccacttgcttgataaaaacaaaatcattta |
47073431 |
T |
|
| Q |
101 |
atcattgtaggcccaacataagtcatctaatggatagaagtttgatgaacaatattcaatgtatttaacttgtctaaagccttgaaatttctagcaatga |
200 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47073430 |
atcgttgtaggcccaacataagtcatctaacggatagaagtttgatgaacaatattcaatgtatttaacttgtctaaagccttgaaatttctagcaatga |
47073331 |
T |
|
| Q |
201 |
acgtagtgtaattaattttcatatgtcaaactctctaatttcaggcttaaatagtgtgaaggttcaaacttgatc |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47073330 |
acgtagtgtaattaattttcatatgtcaaactctctaatttcaggcttaaatagggtgaaggttcaaacttgatc |
47073256 |
T |
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