View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_45 (Length: 277)
Name: NF17972_low_45
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 1187990 - 1187738
Alignment:
| Q |
18 |
caaaaatcattgattgcatgcataatgtacttgtactgcaaggaaaggaatgaataggcaaagagggagttgtgcctcttacacatgaaaaaccttcaat |
117 |
Q |
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| T |
1187990 |
caaaaatcattgattgcatgcataatgtacttgtactgcaaggaaaggaatgaataggcaaagagggagttgtgcctcttacacatgaaaaaccttcaat |
1187891 |
T |
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| Q |
118 |
ttggacataaaaacagctagctcacacaatatgacacaattcaacaccagaacggcaaagaatgtgtgtgtacgtacgattcagcatggcattggcattg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1187890 |
ttggacataaaaacagctagctcacacaatatgacacaattcaacaccagaacggcaaagaatgtgtgtgtacgtacgattcagcatggcattggcattg |
1187791 |
T |
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| Q |
218 |
gcatttttaattgaaatttgtcactagatgcaattcatccatcattcatctca |
270 |
Q |
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| T |
1187790 |
gcatttttaattgaaatttgtcactagatgcaattcatccatcattcatctca |
1187738 |
T |
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