View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_46 (Length: 272)
Name: NF17972_low_46
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_46 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 4192189 - 4192460
Alignment:
| Q |
1 |
ctgtgttgaatttccatgactcgcatccactgaagaaaccgtcttatcaataccctaattttcctattcttctatggcttctcaagatttacttcaggtt |
100 |
Q |
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| T |
4192189 |
ctgtgttgaatttccatgactcgtatccactgaagtaaccgtcttctcaaaaccctaattttcctcttcttctatggcttctcaagttttacttcaggtt |
4192288 |
T |
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| Q |
101 |
tttcttctctcacttctttattattacgcaattcaatgtcaaaaccgtacattttcaattacgctacttaattcacaattttaatttaccaggctctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4192289 |
tttcttctctcacttctttattattacgcaattcaatgtcaaaaccgtacattttcaattacgctacttaattcacaattttaatttaccaggctctgtt |
4192388 |
T |
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| Q |
201 |
ttccccaattcaatgtcctacgtcgaagctatgtttcacttcttcttgcaccgcttccacattcggttctcg |
272 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4192389 |
ttccccaattcaatgtcctccttcgaagctatgtttcacttcttcttgcaccgcttccacattcggttctcg |
4192460 |
T |
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