View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_low_48 (Length: 265)

Name: NF17972_low_48
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17972_low_48
NF17972_low_48
[»] chr8 (12 HSPs)
chr8 (1-253)||(14727553-14727801)
chr8 (186-247)||(26089059-26089120)
chr8 (177-253)||(28865754-28865830)
chr8 (1-93)||(30648837-30648929)
chr8 (1-88)||(27714299-27714386)
chr8 (1-58)||(15329839-15329896)
chr8 (1-58)||(15510208-15510265)
chr8 (1-88)||(26089184-26089271)
chr8 (186-253)||(30648690-30648757)
chr8 (1-94)||(28693207-28693300)
chr8 (1-58)||(28865933-28865990)
chr8 (1-58)||(31039554-31039611)
[»] chr1 (2 HSPs)
chr1 (1-107)||(26086457-26086563)
chr1 (176-250)||(26086619-26086693)
[»] chr7 (3 HSPs)
chr7 (1-74)||(6610926-6610999)
chr7 (176-245)||(6611070-6611139)
chr7 (176-245)||(17292838-17292907)
[»] chr3 (2 HSPs)
chr3 (176-252)||(4819716-4819792)
chr3 (40-93)||(4819862-4819915)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 14727801 - 14727553
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  14727801 gataaactccaccagggggactcaaaactgattggtacatggcagttgcaataagagtggcgactatcaaccaaatgttgcgttgctcttctgtcatgtc 14727702  T
Q  101 acttctagtgcgagttatctcagttaccaatttattactcatagttttggttgtggccattaacctcaaactatgtatgtgcacgtgtgggagcatcagc 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||    
T  14727701 acttctagtgcgagttatctcagataccaatttattactcatagttttggttgtggccattaacctcaacc----tatgtgcacgtgtgggagcatcagc 14727606  T
Q  201 gacttctatgctatgttttgctccaacacttaataatatactcttcatctctg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14727605 gacttctatgctatgttttgctccaacacttaataatatactcttcatctctg 14727553  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 26089120 - 26089059
Alignment:
Q  186 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttca 247  Q
    |||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||    
T  26089120 tgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataatatactcttca 26089059  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 28865830 - 28865754
Alignment:
Q  177 atgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctg 253  Q
    ||||||||||||||||||||| | |||||||| |||  |||||| |||| |||| |||||||||||||| |||||||    
T  28865830 atgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataatatactcttaatctctg 28865754  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 30648929 - 30648837
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 93  Q
    |||||| ||||||||||||||||||  ||||||| || |||||||| ||||||||||| || | |||||||||| || | |||||||| ||||    
T  30648929 gataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctg 30648837  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27714386 - 27714299
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctc 88  Q
    ||||||||||||||  |||| |||| |||||||| |||||||| |||||||||||||| || | ||||| |||| || ||||||||||    
T  27714386 gataaactccaccaacgggagtcaatgctgattgatacatggctgttgcaacaagagtcgcaactatcatccaagtgttgcgttgctc 27714299  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15329896 - 15329839
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagt 58  Q
    |||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||    
T  15329896 gataaactccaccagggggactcagagttgattcgtacatggtagttgcaataagagt 15329839  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15510265 - 15510208
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagt 58  Q
    |||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||    
T  15510265 gataaactccaccagggggactcagagttgattcgtacatggtagttgcaataagagt 15510208  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 26089271 - 26089184
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctc 88  Q
    |||||| ||||| ||||||||||||  ||||||| || || ||||||||||||||||| || | |||||||||| || | ||||||||    
T  26089271 gataaattccactagggggactcaatcctgattgataaatcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctc 26089184  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 30648757 - 30648690
Alignment:
Q  186 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctg 253  Q
    |||||||  ||||| |||||||  |||| |||||| |||||||||||||||||||||||| |||||||    
T  30648757 tgtgggataatcagtgacttctgagctaggttttgttccaacacttaataatatactcttgatctctg 30648690  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28693207 - 28693300
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgt 94  Q
    |||||| ||||||||||||  ||| ||||||||   |||||| |||||||| |||||| |||| ||| ||||||||| ||||||| || |||||    
T  28693207 gataaattccaccagggggtgtcagagctgattcaaacatggtagttgcaataagagtcgcgactattaaccaaatgttgcgttgatcctctgt 28693300  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28865990 - 28865933
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagt 58  Q
    |||||| ||||||||||||||||| || ||||| | |||||| |||||||| ||||||    
T  28865990 gataaaatccaccagggggactcagagttgattcgaacatggtagttgcaataagagt 28865933  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31039554 - 31039611
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagt 58  Q
    |||||||||||||||||||||| |  |||||||| ||| | |||||||||| ||||||    
T  31039554 gataaactccaccagggggactaagtgctgattgatacgtcgcagttgcaataagagt 31039611  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 26086457 - 26086563
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtc 100  Q
    |||||||||||||||||||| ||| ||||||||  ||||||| ||| |||| |||||  |||| ||| ||||||||| |||||||||| |||||||||||    
T  26086457 gataaactccaccagggggagtcagagctgattcatacatggtagtcgcaataagagctgcgactattaaccaaatgttgcgttgctcctctgtcatgtc 26086556  T
Q  101 acttcta 107  Q
    |||||||    
T  26086557 acttcta 26086563  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 26086619 - 26086693
Alignment:
Q  176 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatct 250  Q
    |||||||| |||||||||||||||||||||| ||||||  |||||||||  | ||||||||||||||||| ||||    
T  26086619 tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatct 26086693  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6610926 - 6610999
Alignment:
Q  1 gataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaa 74  Q
    |||||| ||||||||| ||||||||  ||||||| || |||||||||||||| ||||| || ||||||||||||    
T  6610926 gataaattccaccaggaggactcaatcctgattgatagatggcagttgcaacgagagtcgcaattatcaaccaa 6610999  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 6611070 - 6611139
Alignment:
Q  176 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactctt 245  Q
    |||||||| ||||||||  || || |||||||| |||| ||||||||||||| || ||||| ||||||||    
T  6611070 tatgtgcaagtgtgggattatgagtgacttctaagctaggttttgctccaactctgaataacatactctt 6611139  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 17292838 - 17292907
Alignment:
Q  176 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactctt 245  Q
    |||||||| |||||||||||||   |||||||| |||| |||||| |||| |||| ||||| ||||||||    
T  17292838 tatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactctt 17292907  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 4819792 - 4819716
Alignment:
Q  176 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctct 252  Q
    |||||||| ||||||| ||||  | |||||| | || | ||||||||||||||||| ||||||||||||| ||||||    
T  4819792 tatgtgcaagtgtgggtgcattggtgacttccaagccaggttttgctccaacacttgataatatactcttgatctct 4819716  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 4819915 - 4819862
Alignment:
Q  40 tggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 93  Q
    ||||||||||||||||||| || | |||||||||| || |||||||||| ||||    
T  4819915 tggcagttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctg 4819862  T

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