View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17972_low_49 (Length: 263)
Name: NF17972_low_49
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 32642366 - 32642605
Alignment:
| Q |
12 |
agagagatatgatgagaggcaataacacctgcaccatattgtgtcatgtacaatacacaattatgatgatgatatgtttttctttaccctctatannnnn |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32642366 |
agagagatatgatgagaggcaataacacctgcaccatattgtgtcatgtacaatacacaattatgatgatgatatgtttttctttaccctctatattttt |
32642465 |
T |
|
| Q |
112 |
nncttagattatggtatatgtgtgt------aatgtaatatgttattgattttctaataaggtcctaaggttttggagagagagtggaaagaagggtcac |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32642466 |
ttcttagattatggtatatgtgtgtaagtgtaatgtaatatgttattgattttctaataaggtcctaaggttttggagagagagtggaaagaagggtcac |
32642565 |
T |
|
| Q |
206 |
atggggagggatattagagacagctagcaacagctaggtg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32642566 |
atggggagggatattagagacagctagcaacagctaggtg |
32642605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University