View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_low_5 (Length: 621)

Name: NF17972_low_5
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17972_low_5
NF17972_low_5
[»] chr6 (4 HSPs)
chr6 (175-604)||(31866355-31866783)
chr6 (80-169)||(20743443-20743531)
chr6 (298-386)||(10263922-10264009)
chr6 (327-401)||(6763839-6763914)
[»] scaffold0098 (2 HSPs)
scaffold0098 (80-388)||(49949-50265)
scaffold0098 (424-514)||(49841-49931)
[»] chr5 (7 HSPs)
chr5 (84-355)||(15425621-15425894)
chr5 (326-507)||(15425895-15426075)
chr5 (275-380)||(12317604-12317709)
chr5 (82-165)||(12317438-12317521)
chr5 (320-380)||(28753785-28753845)
chr5 (458-576)||(12317719-12317838)
chr5 (325-380)||(26102233-26102288)
[»] chr2 (9 HSPs)
chr2 (84-316)||(29759219-29759450)
chr2 (306-576)||(29759469-29759739)
chr2 (269-381)||(10018274-10018386)
chr2 (80-171)||(8691560-8691650)
chr2 (86-192)||(10018092-10018198)
chr2 (286-378)||(9751561-9751653)
chr2 (112-203)||(9751403-9751494)
chr2 (301-386)||(8691445-8691531)
chr2 (278-378)||(38415553-38415653)
[»] chr8 (4 HSPs)
chr8 (80-390)||(6637149-6637461)
chr8 (145-196)||(17899030-17899081)
chr8 (412-514)||(6637043-6637145)
chr8 (361-393)||(29242035-29242067)
[»] chr4 (4 HSPs)
chr4 (84-316)||(5689756-5689987)
chr4 (84-329)||(25154299-25154547)
chr4 (307-507)||(5689534-5689735)
chr4 (345-439)||(25154937-25155032)
[»] chr1 (2 HSPs)
chr1 (224-404)||(126888-127067)
chr1 (455-535)||(126775-126855)
[»] chr7 (3 HSPs)
chr7 (298-387)||(2931919-2932008)
chr7 (269-380)||(26640761-26640872)
chr7 (453-515)||(26640911-26640973)
[»] chr3 (4 HSPs)
chr3 (269-380)||(498153-498262)
chr3 (110-183)||(498357-498430)
chr3 (460-509)||(4293549-4293598)
chr3 (327-375)||(4245566-4245614)
[»] scaffold0129 (1 HSPs)
scaffold0129 (82-196)||(22450-22560)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 175 - 604
Target Start/End: Complemental strand, 31866783 - 31866355
Alignment:
Q  175 tttttgttataaagaacaagttgttattgtcannnnnnnnnagtgtatgctatttttcaatcttttacctctttccatgtttttnnnnnnncgtatatgc 274  Q
    ||||||||||||||||||||||||||||| ||          |||||||||||||||| |||||||||||||||||||||||||       || ||||||    
T  31866783 tttttgttataaagaacaagttgttattgccattttttttttgtgtatgctatttttcgatcttttacctctttccatgtttttaaaaaaacgcatatgc 31866684  T
Q  275 tatgtcccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaataga 374  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31866683 tatgtcccaaatttgactcgagatagtttctaataaacttctttatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaataga 31866584  T
Q  375 aaataatcaaaaaattgtactgatgaaccaaattgtattgatgaacaagtaaatatcctgcggatttttctgctaatagattaagtttcctgaggaatta 474  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31866583 aaataattaaaaaattgtactgatgaaccaaattgtattgatgaaccagtaaatatcctgtggatttttctgctaatagattaagtttcctgaggaatta 31866484  T
Q  475 tctgcggaaacagctttgctgcggcattacctgcggaattggctgcggaatcacatgcagaacgttggaaggatacattcacgggcagaggaatatctcc 574  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  31866483 tctgcggaaacagttttgctgcggcattacctgcggaattggctgcggaatcacatgcagaacgttgg-aggatacattcacgggcagaggaatctctcc 31866385  T
Q  575 cattcctgaggatatttccgtaggaaagtt 604  Q
    |||||||||||| |||||||||||||||||    
T  31866384 cattcctgaggacatttccgtaggaaagtt 31866355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 20743531 - 20743443
Alignment:
Q  80 agtgttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgac 169  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||  | ||||||| |||||||||||| ||||||||||||||    
T  20743531 agtgttttgtcatattttagtgtttgttgaaatgtatgttatgcatattttataccttcatattgatggagactt-atgtattttatgac 20743443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 298 - 386
Target Start/End: Complemental strand, 10264009 - 10263922
Alignment:
Q  298 tagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataatcaaaa 386  Q
    |||||||||||||||||||| | |||| |||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||    
T  10264009 tagtttctaataaacttctttaccaaataaataattaaaaatca-ttttaatatggttgttggcattcattaatagaaattaatcaaaa 10263922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 6763839 - 6763914
Alignment:
Q  327 aataattaaaaatgacttttaatatggctgttggcattcattaatag-aaaataatcaaaaaattgtactgatgaa 401  Q
    ||||||| |||||| ||||||||| || |||||||||||| |||||| ||||||||||| |||||||  |||||||    
T  6763839 aataatttaaaatgtcttttaatacggttgttggcattcaataatagaaaaataatcaataaattgtgttgatgaa 6763914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 80 - 388
Target Start/End: Complemental strand, 50265 - 49949
Alignment:
Q  80 agtgttttgtcatattttagtgtttgttgaaatgttt-attatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttt 178  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50265 agtgttttgtcatattttagtgtttgttgaaatgttttattatgcatattttgcagcttcataatgatggagacttgatgtattttatgactagtgtttt 50166  T
Q  179 tgttataaagaacaagttgttattgtca-------nnnnnnnnnagtgtatgctatttttcaatcttttacctctttccatgtttttnnnnnnncgtata 271  Q
    ||||| |||||||||||| |||||| ||                ||||| ||||||||||  ||||||||||||||| ||||||| |       || |||    
T  50165 tgttacaaagaacaagtttttattgccatctttttttttttttgagtgtgtgctatttttggatcttttacctctttacatgtttcttaaaaaacgcata 50066  T
Q  272 tgctatgtcccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaat 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||  ||| ||||||||| ||||| |||| ||||||    
T  50065 tgctatgtcccaaatttgactcgagatagtttctaataaacttctttaacaaacaaataattaaaaaaaactgttaatatggttgttgacattgattaat 49966  T
Q  372 agaaaataatcaaaaaa 388  Q
     ||||||||||||||||    
T  49965 tgaaaataatcaaaaaa 49949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 49931 - 49841
Alignment:
Q  424 taaatatcctgcggatttttctgctaatagattaagtttcctgaggaattatctgcggaaacagctttgctgcggcattacctgcggaatt 514  Q
    ||||| |||||||||||||||||  | |   || |||||| ||| |||||| | ||||||||||||||||||| || |||||| |||||||    
T  49931 taaatttcctgcggatttttctgtgatttcgttcagtttcttgaagaattaccagcggaaacagctttgctgctgctttacctacggaatt 49841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 8e-75; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 84 - 355
Target Start/End: Original strand, 15425621 - 15425894
Alignment:
Q  84 ttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttttgtta 183  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15425621 ttttgtcatattatagtgtttgttgaaatgtttattatgcatattttgcagcttcataatgatggagacttgatgtattttatgactagtgtttttgtta 15425720  T
Q  184 taaagaacaagttgttattgtcannnnnnnnnagtgtatgctatttttcaa--tcttttacctctttccatgttttt-nnnnnnncgtatatgctatgtc 280  Q
     |||||||||||| |||||| ||         || |||||||||||||  |  | |||||||||||| |||||||||        || |||||||||||     
T  15425721 caaagaacaagtttttattgcca-ttttttttagcgtatgctatttttggattttttttacctctttacatgtttttaaaaaaaacgcatatgctatgtg 15425819  T
Q  281 ccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggct 355  Q
    ||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  15425820 ccaaatttgactcgagatagtttctaataaacttctatatcaaataaataattaaaaatgacttttaatatggct 15425894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 326 - 507
Target Start/End: Original strand, 15425895 - 15426075
Alignment:
Q  326 aaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataatcaaaaaattgtactgatgaaccaaattgtattgatgaacaagta 425  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || | ||   |||||||| | ||    
T  15425895 aaataattaaaaatgacttttaatatggctgttggcatttattaatagaaaataatcaaataattgtactgatgaaacagactgctctgatgaaccatta 15425994  T
Q  426 aatatcctgcggatttttctgctaatagattaagtttcctgaggaattatctgcggaaacagctttgctgcggcattacctg 507  Q
    ||| ||||| ||| ||||||||   | | || ||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  15425995 aatttcctgggga-ttttctgcgggttggttcagtttcctgaggaattacctgcggaaatagctctgctgcggcattacctg 15426075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 275 - 380
Target Start/End: Original strand, 12317604 - 12317709
Alignment:
Q  275 tatgtcccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaataga 374  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  12317604 tatgtcctaaatttgactcaagatagtttctaataaacttctttatcaaaccagtaattaaaaatgacttttaatatggcttttggcattcattaataga 12317703  T
Q  375 aaataa 380  Q
    ||||||    
T  12317704 aaataa 12317709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 12317438 - 12317521
Alignment:
Q  82 tgttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtatttta 165  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| ||| | |||||||||| ||||||    
T  12317438 tgtttcgtcatatgttagtgtttgttgaaatgtttgttatgcatattttgcaccttcatattgaggaagacttgatgcatttta 12317521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 28753845 - 28753785
Alignment:
Q  320 tcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataa 380  Q
    ||||||||||||||||||| ||||||||||||| |  |||||||||||||| |||||||||    
T  28753845 tcaaacaaataattaaaaaggacttttaatatgccatttggcattcattaaaagaaaataa 28753785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 576
Target Start/End: Original strand, 12317719 - 12317838
Alignment:
Q  458 agtttcctgaggaattatctgcggaaacagctttgct-gcggcattacctgcggaattggctgcggaatcacatgcagaacgttggaaggatacattcac 556  Q
    ||||||||||||| ||| |||| | |||||||||||| | || |||||||| |||||| || ||||||| || ||| | | ||| | |||| ||||||||    
T  12317719 agtttcctgaggatttacctgccgcaacagctttgctgggggaattacctgaggaatttgcagcggaattacctgcggtatgtttgcaggaaacattcac 12317818  T
Q  557 gggcagaggaatatctccca 576  Q
    |||||| ||||  |||||||    
T  12317819 gggcaggggaacttctccca 12317838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 26102233 - 26102288
Alignment:
Q  325 caaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataa 380  Q
    |||||||||| |||||| |||| |||||| | | ||||||||||||||||||||||    
T  26102233 caaataattagaaatgaattttgatatggttttgggcattcattaatagaaaataa 26102288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 84 - 316
Target Start/End: Original strand, 29759219 - 29759450
Alignment:
Q  84 ttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttttgtta 183  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29759219 ttttgtcatattatagtgtttgttgaaatgtttattatgcatattttgcagcttcataatgatggagacttgatgtattttatgactagtgtttttgtta 29759318  T
Q  184 taaagaacaagttgttattgtcannnnnnnnnagtgtatgctatttttcaatcttttacctctttccatgtttttnnnnnnncgtatatgctatgtccca 283  Q
     |||||||||||| |||||| ||         ||||||| ||||||||  || |||||||||||| |||||||||       || ||||||||||| |||    
T  29759319 caaagaacaagtttttattgcca-ttttttttagtgtatcctatttttggattttttacctctttacatgtttttaaaaaaacgcatatgctatgtgcca 29759417  T
Q  284 aatttgactcgagatagtttctaataaacttct 316  Q
    |||||||||||||||||||||||||||||||||    
T  29759418 aatttgactcgagatagtttctaataaacttct 29759450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 306 - 576
Target Start/End: Original strand, 29759469 - 29759739
Alignment:
Q  306 aataaacttct-tcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataatcaaaaaattgtactgatgaacca 404  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  29759469 aataaacttctattatcaaa-aaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataatcaaaaaattgtaccgatgaaaca 29759567  T
Q  405 aattgtattgatgaacaagtaaatatcctgcggatttttctgctaatagattaagtttcctgaggaattatctgcggaaacagctttgctgcggcattac 504  Q
     || ||  | |||||||  ||||| ||||| ||||||||||||  || | || |||||||||| |||||| ||||||||| |||| ||||||||||||||    
T  29759568 gatggttcttatgaacagataaatttcctggggatttttctgcggattggttcagtttcctgacgaattacctgcggaaatagctctgctgcggcattac 29759667  T
Q  505 ctgcggaattggctgcggaatcacatgcagaacgttggaaggatacattcacgggcagaggaatatctccca 576  Q
    ||  |  ||| ||||||||||  ||||| |||| || | |||| ||||| || ||||| ||||| |||||||    
T  29759668 ctaagacatttgctgcggaatttcatgcggaacatttgcaggaaacattgacaggcaggggaatctctccca 29759739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 269 - 381
Target Start/End: Original strand, 10018274 - 10018386
Alignment:
Q  269 atatgctatgtcccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcatt 368  Q
    ||||| |||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| || |||||| | |||    
T  10018274 atatgttatgtcccgagtttgactcaagatagtttctaataaacttctttatcaaacaaataattgaaaatgatttttaatatgccttttggcaataatt 10018373  T
Q  369 aatagaaaataat 381  Q
    || || |||||||    
T  10018374 aaaagtaaataat 10018386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 8691650 - 8691560
Alignment:
Q  80 agtgttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgacta 171  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||||||| || ||||||| |||||||||||| ||||||||||||||||    
T  8691650 agtgttttgtcacaatttagtgtttgttgaaatgtttgttatgcatattttacaccttcatattgatggagactt-atgtattttatgacta 8691560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 10018092 - 10018198
Alignment:
Q  86 ttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttttgttata 185  Q
    |||||||||||| |||||||||||||||| | |||||||||||||||| |||  || |||||||||||  || ||||||||||||| ||||||||||| |    
T  10018092 ttgtcatattttggtgtttgttgaaatgtctgttatgcatattttgcagcttagtattgatggagactaaatatattttatgactaatgtttttgttaga 10018191  T
Q  186 aagaaca 192  Q
    |||||||    
T  10018192 aagaaca 10018198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 286 - 378
Target Start/End: Original strand, 9751561 - 9751653
Alignment:
Q  286 tttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaat 378  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||||| | ||||   |||||||||||||||    
T  9751561 tttgactcaagatagtttataataaacttctttatcaaacaaataattaaaaatgacttctattatggattttggttatcattaatagaaaat 9751653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 9751403 - 9751494
Alignment:
Q  112 tgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttttgttataaagaacaagttgttattg 203  Q
    ||||| |||||||||||||||| ||||||| |||  |||||||||||||||||||||||| ||||||||||| || ||| ||||| ||||||    
T  9751403 tgtttgttatgcatattttgcaccttcatattgagagagacttgatgtattttatgactaatgtttttgttacaatgaataagtttttattg 9751494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 8691531 - 8691445
Alignment:
Q  301 tttctaataaacttcttcatcaaacaaataattaaaaat-gacttttaatatggctgttggcattcattaatagaaaataatcaaaa 386  Q
    |||||||||||||  || ||||| ||||||||| ||| | || ||||||||||||| |||| |||||||| | |||||||| |||||    
T  8691531 tttctaataaactagtttatcaatcaaataatttaaatttgatttttaatatggcttttggaattcattacttgaaaataaacaaaa 8691445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 38415553 - 38415653
Alignment:
Q  278 gtcccaaatttgactcg--agatagtttctaataaacttcttcatc-aaacaaataattaaaaatgacttttaatatggctgttggcattcattaataga 374  Q
    ||||||||||||||||   |||||| || |||||||||||||  |  ||| ||||||||||||||||||   ||||| ||| |||||||||||||||| |    
T  38415553 gtcccaaatttgactcacaagatagcttttaataaacttctttttttaaataaataattaaaaatgact---aatatagcttttggcattcattaatata 38415649  T
Q  375 aaat 378  Q
    ||||    
T  38415650 aaat 38415653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 80 - 390
Target Start/End: Complemental strand, 6637461 - 6637149
Alignment:
Q  80 agtgttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgttttt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  6637461 agtgttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcagcttcatagtgatggagacttgatgtattttatgactagtgctttt 6637362  T
Q  180 gttataaagaacaagttgttattgtca---nnnnnnnnnagtgtatgctatttttcaatcttttacctctttccatgtttttnnnnnnncgtatatgcta 276  Q
    || |||||||||| ||| |||||| ||            | | ||||||||||||  || |||||||||| | |||||||||       || ||||||||    
T  6637361 gtcataaagaacaggtttttattgccattgttagttttgattatatgctatttttggatattttacctctatacatgttttt-aaaaaccgcatatgcta 6637263  T
Q  277 tgtcccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaatagaaa 376  Q
    |||||||||||| ||||   |||||| | |||||| |||||  | ||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||    
T  6637262 tgtcccaaatttcactcacaatagttcccaataaatttctttgttaaacaaataataaaaaatgacttttaatccggctattggcattcattaatagaaa 6637163  T
Q  377 ataatcaaaaaatt 390  Q
    ||||| ||||||||    
T  6637162 ataataaaaaaatt 6637149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 17899081 - 17899030
Alignment:
Q  145 atggagacttgatgtattttatgactagtgtttttgttataaagaacaagtt 196  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  17899081 atggagacttgatgtattttatgactagtatttttgttacaatgaacaagtt 17899030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 514
Target Start/End: Complemental strand, 6637145 - 6637043
Alignment:
Q  412 ttgatgaacaagtaaatatcctgcggatttttctgctaatagattaagtttcctgaggaattatctgcggaaacagctttgctgcggcattacctgcgga 511  Q
    ||||||||  ||||||| |||||| ||| |||||||  || | || ||||| |||||||||||  |||||||| |||||||| ||| | |||||||||||    
T  6637145 ttgatgaatgagtaaatttcctgccgatgtttctgcggattggttcagtttgctgaggaattacttgcggaaatagctttgcagcgactttacctgcgga 6637046  T
Q  512 att 514  Q
    |||    
T  6637045 att 6637043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 29242035 - 29242067
Alignment:
Q  361 cattcattaatagaaaataatcaaaaaattgta 393  Q
    |||||||||||||||||| ||||||||||||||    
T  29242035 cattcattaatagaaaatgatcaaaaaattgta 29242067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 84 - 316
Target Start/End: Complemental strand, 5689987 - 5689756
Alignment:
Q  84 ttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttttgtta 183  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  5689987 ttttgtcatattatagtgtttgttgaaatgtttattatgcatattttgcagcttcataatgatggaaacttgatgtattttatgaatagtgtttttgtta 5689888  T
Q  184 taaagaacaagttgttattgtcannnnnnnnnagtgtatgctatttttcaatcttttacctctttccatgtttttnnnnnnncgtatatgctatgtccca 283  Q
     |||||||||||| |||||| ||         ||||||||||||||||  || |||||||||||| |||||||||       || ||||||||||| |||    
T  5689887 caaagaacaagtttttattgcca-tttttttgagtgtatgctatttttggattttttacctctttacatgtttttaaaaaaacgcatatgctatgtgcca 5689789  T
Q  284 aatttgactcgagatagtttctaataaacttct 316  Q
    ||||||||||||||||||||||||||| |||||    
T  5689788 aatttgactcgagatagtttctaataatcttct 5689756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 84 - 329
Target Start/End: Original strand, 25154299 - 25154547
Alignment:
Q  84 ttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttttgtta 183  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25154299 ttttgtcatattatagtgtttcttgaaatgtttattatgtatattttgca-cttcataatgatggagacttgatgtattttatgactagtgtttttgtta 25154397  T
Q  184 taaagaacaagttgttattgtcannnnnnnnnagtgtatgctatttttcaa----tcttttacctctttccatgtttttnnnnnnncgtatatgctatgt 279  Q
     |||||||||| |  ||||| ||         ||||||||||||||||  |    | |||||||| |||  ||||||||       || |||||||||||    
T  25154398 caaagaacaagcttgtattgccatttttttttagtgtatgctatttttggattttttttttacctttttatatgttttttaaaaaacgcatatgctatgt 25154497  T
Q  280 cccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaat 329  Q
     ||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  25154498 gccaaatttgactcgagatagtttctaataaacttctatatcaaaaaaat 25154547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 307 - 507
Target Start/End: Complemental strand, 5689735 - 5689534
Alignment:
Q  307 ataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataatcaa-aaaattgtactgatgaaccaa 405  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||     
T  5689735 ataaacttctatatcaaactaataattaaaaatgacttttaatatggttgttagcattcattaatagaaaataatcaaaaaaattgtactgatgaaacag 5689636  T
Q  406 attgtattgatgaacaagtaaatatcctgcggatttttctgctaatagattaagtttcctgaggaattatctgcggaaacagctttgctgcggcattacc 505  Q
    | ||   |||||||| | ||||| ||||| ||||||||||||  || | || ||||||||||||||||| ||||||||| | || |||||| ||||||||    
T  5689635 actgctctgatgaaccattaaatttcctggggatttttctgcggattggttcagtttcctgaggaattacctgcggaaatatctctgctgcagcattacc 5689536  T
Q  506 tg 507  Q
    ||    
T  5689535 tg 5689534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 439
Target Start/End: Original strand, 25154937 - 25155032
Alignment:
Q  345 ttaatatggctgttggcattcattaatagaaaa-taatcaaaaaattgtactgatgaaccaaattgtattgatgaacaagtaaatatcctgcggat 439  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||  |||||||| ||||||| ||||||||||    
T  25154937 ttaatatggctgttggcattcattaatagaaaaataatcaaaaaattgtactgatgaaacaaattgttctgatgaaccagtaaatttcctgcggat 25155032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 224 - 404
Target Start/End: Complemental strand, 127067 - 126888
Alignment:
Q  224 ctatttttcaatcttttacctctttccatgtttttnnnnnnncgtatatgctatgtcccaaatttgactcgagatagtttctaataaacttcttcatcaa 323  Q
    ||||||||  ||||||||||||||| |||||||||       || ||||||||| ||||||||||||||||||||||||||||| ||  ||||| |||||    
T  127067 ctatttttggatcttttacctctttacatgtttttgaaaaaacgcatatgctatatcccaaatttgactcgagatagtttctaagaagtttctttatcaa 126968  T
Q  324 acaaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataatcaaaaaattgtactgatgaacca 404  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||| || ||||||||||||    
T  126967 acaaataattaaaaaagacttttaatatggttgttgacattcattactagaaaataatcaaaaaa-tgcactgatgaacca 126888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 455 - 535
Target Start/End: Complemental strand, 126855 - 126775
Alignment:
Q  455 ttaagtttcctgaggaattatctgcggaaacagctttgctgcggcattacctgcggaattggctgcggaatcacatgcaga 535  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||    
T  126855 ttaagtttcctgaggaactacctgcggaaacagctttgctgcagcattacctgcagaatttgctgcggaattacatgcaga 126775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 2931919 - 2932008
Alignment:
Q  298 tagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcattaatagaaaataatcaaaaa 387  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||    
T  2931919 tagtttctaataaacttctttatcaaacaaataattaaaaatcacttttaatatggctgttggcattcattgatagaaaataattaaaaa 2932008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 269 - 380
Target Start/End: Original strand, 26640761 - 26640872
Alignment:
Q  269 atatgctatgtcccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcatt 368  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||||| |||| |||||||||||||||| ||||||| ||  ||| ||||||||||||    
T  26640761 atatgctatgtcccaaatttaactcaagataatttctaataaacttctttatcacacaaataattaaaaattacttttattacagcttttggcattcatt 26640860  T
Q  369 aatagaaaataa 380  Q
    ||||||||||||    
T  26640861 aatagaaaataa 26640872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 515
Target Start/End: Original strand, 26640911 - 26640973
Alignment:
Q  453 gattaagtttcctgaggaattatctgcggaaacagctttgctgcggcattacctgcggaattg 515  Q
    |||||||||||||||||| ||  |||| ||||||||||||||| || ||||| || |||||||    
T  26640911 gattaagtttcctgaggattttcctgctgaaacagctttgctggggaattacatgtggaattg 26640973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 269 - 380
Target Start/End: Complemental strand, 498262 - 498153
Alignment:
Q  269 atatgctatgtcccaaatttgactcgagatagtttctaataaacttcttcatcaaacaaataattaaaaatgacttttaatatggctgttggcattcatt 368  Q
    ||||||||||||| ||||||||||| |  || |||||||||||| || | ||||||| | ||||||||||||||||||||||||||| || |||||||||    
T  498262 atatgctatgtcctaaatttgactcaa--taatttctaataaacatcattatcaaaccagtaattaaaaatgacttttaatatggcttttcgcattcatt 498165  T
Q  369 aatagaaaataa 380  Q
    ||||||||||||    
T  498164 aatagaaaataa 498153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 498430 - 498357
Alignment:
Q  110 aatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttttgtta 183  Q
    ||||||| |||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||| | |||||||||    
T  498430 aatgtttgttatgcatattttgcaccttcatattgagggagactttatgtattttaagactaatctttttgtta 498357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 4293598 - 4293549
Alignment:
Q  460 tttcctgaggaattatctgcggaaacagctttgctgcggcattacctgcg 509  Q
    ||||||||||| ||| ||||| ||||||||||||||||| ||||||||||    
T  4293598 tttcctgaggatttacctgcgaaaacagctttgctgcggaattacctgcg 4293549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 4245566 - 4245614
Alignment:
Q  327 aataattaaaaatgacttttaatatggctgttggcattcattaatagaa 375  Q
    |||||||||||| ||||||||||||| |  |||||||||||||| ||||    
T  4245566 aataattaaaaaggacttttaatatgccatttggcattcattaaaagaa 4245614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 22560 - 22450
Alignment:
Q  82 tgttttgtcatattttagtgtttgttgaaatgtttattatgcatattttgcaacttcataatgatggagacttgatgtattttatgactagtgtttttgt 181  Q
    |||||||||||||||| ||||||||||||||  || |||||||||||||| | ||| ||| |||| |||||    ||||||||||||||| |||||||||    
T  22560 tgttttgtcatattttcgtgtttgttgaaataattgttatgcatattttggagcttgatattgattgagac----tgtattttatgactaatgtttttgt 22465  T
Q  182 tataaagaacaagtt 196  Q
    || ||| ||||||||    
T  22464 tagaaaaaacaagtt 22450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University