View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_low_53 (Length: 247)

Name: NF17972_low_53
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17972_low_53
NF17972_low_53
[»] chr4 (3 HSPs)
chr4 (1-242)||(2871847-2872088)
chr4 (12-232)||(2902706-2902926)
chr4 (12-234)||(2882148-2882367)
[»] chr2 (4 HSPs)
chr2 (161-241)||(44215127-44215207)
chr2 (12-241)||(44227139-44227365)
chr2 (161-241)||(44238418-44238498)
chr2 (12-68)||(44214981-44215037)
[»] chr7 (3 HSPs)
chr7 (187-240)||(39344151-39344204)
chr7 (187-240)||(39552767-39552820)
chr7 (187-240)||(39543544-39543597)
[»] chr8 (1 HSPs)
chr8 (195-232)||(4494209-4494246)
[»] chr1 (2 HSPs)
chr1 (12-64)||(2154254-2154306)
chr1 (12-68)||(2166677-2166733)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2872088 - 2871847
Alignment:
Q  1 tcaatactacctacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagcagctttgatcaacctattcaaaagtttatgtct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2872088 tcaatactacctacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagcagctttgatcaacctattcaaaagtttctgtct 2871989  T
Q  101 ttcttgaactccaagtttatctatatcaataatctcattggcaactccatgtgaactggccaacaaccctttctttaaacgattgtaagtagggagtttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2871988 ttcttgaactccaagtttatctatatcaataatctcattggcaactccatgtgaactggccaacaaccctttctttaaacgattgtaagtagggagtttt 2871889  T
Q  201 tcaattgcagcccatttgagagcttcttcatcatattcttcg 242  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  2871888 tcaattgcagcccatttgagggcttcttcatcatcttcttcg 2871847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 2902706 - 2902926
Alignment:
Q  12 tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagcagctttgatcaacctattcaaaagtttatgtctttcttgaactc 111  Q
    |||||||||||||||||||| ||||||||||||||||| |||||  ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| ||    
T  2902706 tacctatcaattctttccttaagcttcaacaaaaacttctcatttccctcttcagcaacattgatcaacctatccaatagtttttgtctttcttgaaatc 2902805  T
Q  112 caagttta-tctatatcaataatctcattggcaactccatgtgaactggccaacaaccctttctttaaacgattgtaagtagggagtttttcaattgcag 210  Q
    |||| | | |  |||| |  ||||||||| ||||||||| | ||  | ||||||||||||||| ||||||| || ||||| ||||||||||||| |||||    
T  2902806 caagatcacttaatat-atcaatctcatttgcaactccacgcgatgtcgccaacaaccctttccttaaacggttataagtcgggagtttttcaagtgcag 2902904  T
Q  211 cccatttgagagcttcttcatc 232  Q
    ||||| | ||||||||||||||    
T  2902905 cccatctaagagcttcttcatc 2902926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 2882367 - 2882148
Alignment:
Q  12 tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagcagctttgatcaacctattcaaaagtttatgtctttcttgaactc 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| | || |||||||||| ||| ||||| ||| | ||||||| ||    
T  2882367 tacctatcaattctttccttgagcttcaacaaaaacttttcatttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttgaaatc 2882268  T
Q  112 caagtttatctatatcaataatctcattggcaactccatgtgaactggccaacaaccctttctttaaacgattgtaagtagggagtttttcaattgcagc 211  Q
    |||| |    ||||||   || |||||| ||||||||| | ||  | |||||||| |||||| | ||||| || ||||||||||||||||||| ||||||    
T  2882267 caagatctgttatatc---aacctcattagcaactccacgcgatgtcgccaacaatcctttcctcaaacggttataagtagggagtttttcaagtgcagc 2882171  T
Q  212 ccatttgagagcttcttcatcat 234  Q
    |||||| ||||||||||||||||    
T  2882170 ccatttaagagcttcttcatcat 2882148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 44215127 - 44215207
Alignment:
Q  161 caacaaccctttctttaaacgattgtaagtagggagtttttcaattgcagcccatttgagagcttcttcatcatattcttc 241  Q
    |||||| |||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||    
T  44215127 caacaaaccttttcttagacgattgtaagtaggtagtttttcaagtgcagcccatttgagagcttcttcatcatcttcttc 44215207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 44227139 - 44227365
Alignment:
Q  12 tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagcagctttgatcaacctattcaaaagtttatgtctttcttgaactc 111  Q
    |||||||||| ||||||||| | |||||||| |||| |||||||||||||||||||| | || | |||||| | ||||||||| ||  |||||||||       
T  44227139 tacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaag 44227238  T
Q  112 caagtttatctatatcaataatctcattggcaactccatgtgaactggccaacaaccctttctttaaacgattgtaagtagggagtttttcaattgcagc 211  Q
    |||| | | | | |||||     ||||  ||| ||||||| |||   | |||||| |||||  ||| |||||| |||||||| || ||||||| ||||||    
T  44227239 caagatcaccaacatcaact---tcatgagcacctccatgagaagctgtcaacaaaccttttcttagacgattataagtaggtagcttttcaagtgcagc 44227335  T
Q  212 ccatttgagagcttcttcatcatattcttc 241  Q
    ||||||||||||||||||||||| ||||||    
T  44227336 ccatttgagagcttcttcatcatcttcttc 44227365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 44238418 - 44238498
Alignment:
Q  161 caacaaccctttctttaaacgattgtaagtagggagtttttcaattgcagcccatttgagagcttcttcatcatattcttc 241  Q
    ||||||||||||  ||| ||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||| ||||||    
T  44238418 caacaacccttttcttagacgattgtaagtaggtagtttttcaagggcagcccatttaagagcttcttcatcatcttcttc 44238498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 44214981 - 44215037
Alignment:
Q  12 tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagca 68  Q
    |||||||||| ||||||||| | |||||||| ||||  |||||||||||||||||||    
T  44214981 tacctatcaactctttccttgaccttcaacagaaacccttcattatcctcttcagca 44215037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 39344204 - 39344151
Alignment:
Q  187 aagtagggagtttttcaattgcagcccatttgagagcttcttcatcatattctt 240  Q
    ||||||| ||||| | ||||||||||||||| |||||||||||||||| |||||    
T  39344204 aagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttctt 39344151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 39552767 - 39552820
Alignment:
Q  187 aagtagggagtttttcaattgcagcccatttgagagcttcttcatcatattctt 240  Q
    ||||||| ||||| | ||||||||||||||| |||||||||||||||| |||||    
T  39552767 aagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttctt 39552820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 39543544 - 39543597
Alignment:
Q  187 aagtagggagtttttcaattgcagcccatttgagagcttcttcatcatattctt 240  Q
    ||||||| ||||| | ||| ||||||||||| |||||||||||||||| |||||    
T  39543544 aagtaggaagtttctgaatggcagcccatttaagagcttcttcatcatcttctt 39543597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 4494246 - 4494209
Alignment:
Q  195 agtttttcaattgcagcccatttgagagcttcttcatc 232  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  4494246 agtttctcaattgcagcccatttaagagcttcttcatc 4494209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 2154254 - 2154306
Alignment:
Q  12 tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttc 64  Q
    ||||| || ||||||||||| || |||||||| |||||||||||||| |||||    
T  2154254 tacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttc 2154306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 2166677 - 2166733
Alignment:
Q  12 tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagca 68  Q
    ||||| || ||||||||||| || |||||||| |||||||| ||||| |||||||||    
T  2166677 tacctttcgattctttccttgagtttcaacaagaacttttcgttatcttcttcagca 2166733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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