View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_58 (Length: 238)
Name: NF17972_low_58
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 21235015 - 21235132
Alignment:
| Q |
105 |
tttaaacatataaagtacgtaaatcatgttatgaaaaaggaaatatatatcatttctaacatatatcatataaaaaatgattttatgcattttcctacta |
204 |
Q |
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| T |
21235015 |
tttaaacatataaagtacgtaaatcatgttataaaaaaggaaatatatatcatttataacatatatcatataaaaaatgattttatgcatttttctacaa |
21235114 |
T |
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| Q |
205 |
tcacaaacacatgcaaaa |
222 |
Q |
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|||||||||||||||||| |
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| T |
21235115 |
tcacaaacacatgcaaaa |
21235132 |
T |
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Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 21234869 - 21234950
Alignment:
| Q |
10 |
atgttcatcgtattccataatcatcattatttatatatctttcttataatcctcatgttcataattatcaatgttctcatta |
91 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21234869 |
atgttcatcgtattccataatgatcattatttatatatctttcttataatcctcatgttcataatcatcaatgttctcatta |
21234950 |
T |
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