View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_59 (Length: 238)
Name: NF17972_low_59
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7488592 - 7488365
Alignment:
| Q |
1 |
caacagttgaaaaattgagctcagaagggatatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcatt |
100 |
Q |
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| T |
7488592 |
caacagttgaaaaattgagcttagaagggatatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcatt |
7488493 |
T |
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| Q |
101 |
gatgggttttagatgtgttcaacggtcttggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgacagtcctaatctc |
200 |
Q |
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| T |
7488492 |
gatgggttttagatgtgttcaacggtcttggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgatagtcctaatctc |
7488393 |
T |
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| Q |
201 |
atgatccttcatgaaacaaaaccctatg |
228 |
Q |
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| T |
7488392 |
atgatccttcatgaaacaaaaccctatg |
7488365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 7475700 - 7475563
Alignment:
| Q |
29 |
gatatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtct |
128 |
Q |
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| T |
7475700 |
gatatcggagaagatgagtttaggaatagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttct |
7475601 |
T |
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| Q |
129 |
tggaatgatcttactcagaaccccacctttctgaaaag |
166 |
Q |
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| T |
7475600 |
tggaatgatcttattcagacccccacctttctgaaaag |
7475563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 7873146 - 7873275
Alignment:
| Q |
54 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
153 |
Q |
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| T |
7873146 |
atagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaaccta |
7873245 |
T |
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| Q |
154 |
cctttctgaaaaggaggcacataaacatgt |
183 |
Q |
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| T |
7873246 |
cctttatgaaaagaaggcagatgaacatgt |
7873275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 6943480 - 6943659
Alignment:
| Q |
30 |
atatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtctt |
129 |
Q |
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| T |
6943480 |
atatcggagatggtgaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatctt |
6943579 |
T |
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| Q |
130 |
ggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatcctt |
209 |
Q |
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|||||| |||| ||||| ||| ||||||||||| || ||||||| || ||| ||| ||||||| ||||||||||||| |
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| T |
6943580 |
ggaatgttcttgttcagagccctgcctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatcctt |
6943659 |
T |
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