View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_6 (Length: 578)
Name: NF17972_low_6
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 221 - 413
Target Start/End: Original strand, 26446654 - 26446847
Alignment:
| Q |
221 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacagtaatgcnnnnnnn-ccaacctcagtgcaaactccaacaacttcttcaactgattc |
319 |
Q |
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| T |
26446654 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacaataatgcaaaaaaaaccaacctcagtgcaaactccaacaacttcttcaactgattc |
26446753 |
T |
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| Q |
320 |
ctcaaagacatcgttctttgaaagcttattgagaaggtggttttgaaatttttccgtctcctgaaacccacatacaaaaagattatttattttc |
413 |
Q |
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| T |
26446754 |
ttcaaagacatctttctttgaaagcttattgagaaggtggttttgaaatttttccgtctcctgaaacccacaaacaaaaagattatttattttc |
26446847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 460 - 564
Target Start/End: Original strand, 26446888 - 26446992
Alignment:
| Q |
460 |
cttacggaatcagcaaattcaggaattgggtcagggaatttgtattcagcagctctagtaatggagcgttttgtggatgaaaagggtaaagttgagacct |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26446888 |
cttacggaatcagcaaattcaggaattgggtcagggaatttgtattcagcagctctagtaatggagcgttttatggatgaaaagggtaaagttgagacct |
26446987 |
T |
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| Q |
560 |
ttctg |
564 |
Q |
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||||| |
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| T |
26446988 |
ttctg |
26446992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 26446448 - 26446575
Alignment:
| Q |
13 |
aaaatacatatataagtatattttcgtaattttgatacatttagagactataggaacaaactactcgcatattcaagaaccaagatgtcagtctactcac |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||| ||| | | ||| |||| |
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| T |
26446448 |
aaaatacatatataagtatatttttgtaattttgatacatttagagactattggaacaaacttgtcgcatattgaaggaccaaaatgactggcta-tcac |
26446546 |
T |
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| Q |
113 |
taaatatactatcaaattagctaaactca |
141 |
Q |
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| T |
26446547 |
taaatatactatcaaattagctaaactca |
26446575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 42619227 - 42619340
Alignment:
| Q |
28 |
gtatattttcgtaattttgatacatttagagactataggaacaaactactcgcatattcaagaaccaagatgtcagtctactcactaaatatactatcaa |
127 |
Q |
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|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||| |
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| T |
42619227 |
gtatattttcgtaattttgatatattcagagactatatgaacaaactactcgcatattcaaggaccaaaatgacagtctactcacaaaatatactatcaa |
42619326 |
T |
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| Q |
128 |
attagctaaactca |
141 |
Q |
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||||| |||||||| |
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| T |
42619327 |
attagttaaactca |
42619340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 42619406 - 42619501
Alignment:
| Q |
221 |
cttgtaattaaccaaattagctagtaaaacaaagagaattgacagtaatgcnnnnnnnccaacctcagtgcaaactccaacaacttcttcaactgattc |
319 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||| |
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| T |
42619406 |
cttgtaattaaccaaattagctagtaaaac--agagaattgacaataatgc-aaaagaccgacctcagtgcaaactccaacaacttcttcaacagattc |
42619501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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