View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_60 (Length: 237)
Name: NF17972_low_60
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 2571450 - 2571568
Alignment:
| Q |
93 |
tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac |
192 |
Q |
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| T |
2571450 |
tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac |
2571549 |
T |
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| Q |
193 |
cacctttcattatacttcc |
211 |
Q |
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|||||||||||| |||||| |
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| T |
2571550 |
cacctttcattaaacttcc |
2571568 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 2571199 - 2571256
Alignment:
| Q |
32 |
ttaataacacattgaagagtgacaatgttattttccaaataaactatttagagatagg |
89 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
2571199 |
ttaataacacattgaagactgacaatgttatttttcaaataaactatttagagatagg |
2571256 |
T |
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