View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_62 (Length: 231)
Name: NF17972_low_62
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 14727488 - 14727334
Alignment:
| Q |
1 |
acttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaagaaatg |
100 |
Q |
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| T |
14727488 |
acttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaagaaatg |
14727389 |
T |
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| Q |
101 |
tactagatctaaacaacctatctactttataagttgtctttccctcatctttcttt |
156 |
Q |
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| T |
14727388 |
tactagatctaaacaacctatctactttataagttgtc-ttccctcatcttccttt |
14727334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 17292980 - 17293074
Alignment:
| Q |
1 |
acttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaag |
95 |
Q |
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| T |
17292980 |
acttaccaacaatcgaagcgcctgtgctacatagtaattcatgaacgatacaattgttaaagatcattcatattagcaactaaaatattcacaag |
17293074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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