View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_63 (Length: 230)
Name: NF17972_low_63
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 18761446 - 18761327
Alignment:
| Q |
95 |
gaagatcaggaagtacaagactgagggggcataaacctaaccagtaaaattatattatctcaacatattctctcattcaaaccaactatatataaaagta |
194 |
Q |
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| T |
18761446 |
gaagatcaggaagtacaagactgagggggcataaacctaaccattaaaattatattatctcaacatattctctcattcaaaccaactatatataaaagta |
18761347 |
T |
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| Q |
195 |
actaaccggctccttttgct |
214 |
Q |
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| T |
18761346 |
actaaccggctccttttgct |
18761327 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 27292124 - 27292161
Alignment:
| Q |
95 |
gaagatcaggaagtacaagactgagggggcataaacct |
132 |
Q |
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| T |
27292124 |
gaagatcgggaagtacaagactgagggggcataaacct |
27292161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 9734432 - 9734395
Alignment:
| Q |
95 |
gaagatcaggaagtacaagactgagggggcataaacct |
132 |
Q |
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| T |
9734432 |
gaagatcaggaagtataagactgagagggcataaacct |
9734395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 27997498 - 27997463
Alignment:
| Q |
96 |
aagatcaggaagtacaagactgagggggcataaacct |
132 |
Q |
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| T |
27997498 |
aagatcaggaagtacaagact-agggggcataaacct |
27997463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 28054800 - 28054765
Alignment:
| Q |
96 |
aagatcaggaagtacaagactgagggggcataaacct |
132 |
Q |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
28054800 |
aagatcaggaagtacaagact-agggggcataaacct |
28054765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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