View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_low_66 (Length: 220)

Name: NF17972_low_66

Description: NF17972

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17972_low_66

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 46 - 220

Target Start/End: Original strand, 26985158 - 26985332

Alignment:

Q	46	tacgtttattattaattatacattagaattggatatttagtttactaagtataaattttgaatcttgattcttggattttaccaagcaacgttatatttt	145	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26985158	tacgtttattattaattatacattagaattgaatatttagtttactaagtataaattttgaattttgattcttggattttaccaagcaacgttatatttt	26985257	T

Q	146	taatttcatcaaatcatctgatatatatgattatgacacttcattagcaaatgattatgacatttacacagattc	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	26985258	taatttcatcaaatcatctgatatatatgattatgacacttcattagcaaatgattatgacacttacacagattc	26985332	T

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Target: chr3; HSP #2

Raw Score: 45; E-Value: 8e-17

Query Start/End: Original strand, 102 - 207

Target Start/End: Original strand, 26983152 - 26983265

Alignment:

Q	102	tttgaatcttgattcttggattttaccaagcaacgttat--------atttttaatttcatcaaatcatctgatatatatgattatgacacttcattagc	193	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	26983152	tttgaatcttgattcttggattttaccaagtaacgttattctttcaaatttttaatttcctcaaatcatctaataaatatgattatgaccctcttttagc	26983251	T

Q	194	aaatgattatgaca	207	Q
		\|\|\|\|\| \|\|\|\|\|\|\|
T	26983252	aaatgcatatgaca	26983265	T

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