View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_low_7 (Length: 520)
Name: NF17972_low_7
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 2268273 - 2267782
Alignment:
| Q |
9 |
catgaccagacaaatgcaatcaagagttaattaaaaatgcaaagttctagttatatcaatcacatgaacaagtgtgaagaaatcaagtatctaagttaat |
108 |
Q |
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| T |
2268273 |
catgaccagacaaatgcaatcaagagttaattaaaaatgcaaagttctagttatatcaatcacatgaacaagtgtgaagaaatcaagtatctaagttaat |
2268174 |
T |
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| Q |
109 |
tcccaacattactatcaattagaatgtcattatagaaattttactagttaccgaagagcaaatgtgaagaatagttatgcaagggtaattatgaatagtt |
208 |
Q |
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| T |
2268173 |
tcccaacattactatcaattacaatgtcattatagaaattttactagttaccaaagagcaaatgtgaagaatagttatgcaagggtaattatgaatagtt |
2268074 |
T |
|
| Q |
209 |
atagatattatagtggaaaccagcatctacagctcttacggtacatggcttagactcagccctgtcattctattgtaggtgcaggctattacaatatgca |
308 |
Q |
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| T |
2268073 |
atagatattatagtggaaaccagcatctacagctcttacggtgcatggcttagactcagccctgtcattctattgtaggtgcaggctattacaatatgca |
2267974 |
T |
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| Q |
309 |
actatcaccagaactgaaattaacttaagtgtaactacgatgtgcctatttatggcatgaccacaaattgagcattggaaaattatcaaagcgcattcgg |
408 |
Q |
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| T |
2267973 |
actatcaccagaactgaaattaacttaagtgtaactacaatgtgcctatttatggcatgaccacaaattgagcattggaaaattatcaaagcgcgttcgg |
2267874 |
T |
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| Q |
409 |
cggtatcttaaaggctccactgatcatggccttcttttactgccagaccagtcatctcatttacaggtattttgagatgccaattgggcatc |
500 |
Q |
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| T |
2267873 |
cggtatcttaaaggctccactgatcatggccttcttttactgccagaccagtcatctcatttacaggtattttgagatgccaattgggcatc |
2267782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 501
Target Start/End: Original strand, 650285 - 650439
Alignment:
| Q |
349 |
tgtgcctatttatggcatgaccacaaattgagcattggaaaattatcaaagcgcattcggcggtatctt-aaaggctccactgatcatggccttctttta |
447 |
Q |
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|||||| |||||||||||| |||| || ||||||| |||||||| ||| || ||||| || ||||||| |||||||| ||||||||||||| ||||||| |
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| T |
650285 |
tgtgccaatttatggcatggccactaaatgagcataggaaaattgtcagagtgcattttgcagtatcttaaaaggctcaactgatcatggccatctttta |
650384 |
T |
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| Q |
448 |
ctgccagaccagtcatctc-atttacaggtattttgagatgccaattgggcatct |
501 |
Q |
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| T |
650385 |
ccgacagatcagtcacatcgttttacaggtattttgcgatgccaattgggaatct |
650439 |
T |
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