View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_high_13 (Length: 384)
Name: NF17973_high_13
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 167 - 342
Target Start/End: Original strand, 41805146 - 41805321
Alignment:
| Q |
167 |
agagagcacttcaaatcaggatttctactgcagaagaaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
266 |
Q |
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| T |
41805146 |
agagagcacttcaaatcaggatttctactgcagaagcaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
41805245 |
T |
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| Q |
267 |
cagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaaccacaaaaatattgagaaccgcatctca |
342 |
Q |
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| T |
41805246 |
cagtgtgatatctggaatcgatactgtaagcttaaatttttttgacatccacaaaaatattgagaaccgcatctca |
41805321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 41804743 - 41804841
Alignment:
| Q |
12 |
aagaatgaattagccaacaaaaacatggatcttcagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
110 |
Q |
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| T |
41804743 |
aagaatgaattagccaacaaaaacatggatcttcagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
41804841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 41798350 - 41798442
Alignment:
| Q |
12 |
aagaatgaattagccaacaaaaacatggatcttcagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaa |
104 |
Q |
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| T |
41798350 |
aagaatgaattagcctacaaaaacatggatcttcagagaacattggaagaacaagaagatgcatatcagaagttgaatgaagaatataaacaa |
41798442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 215 - 367
Target Start/End: Original strand, 41812017 - 41812169
Alignment:
| Q |
215 |
ctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaa |
314 |
Q |
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| T |
41812017 |
ctgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagctctaaattttcggatga |
41812116 |
T |
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| Q |
315 |
ccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggttg |
367 |
Q |
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| T |
41812117 |
ctgcaataattatgagaaccgcatctcaaacatctcatacgagcttcaggttg |
41812169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 41805049 - 41805111
Alignment:
| Q |
111 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
173 |
Q |
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| T |
41805049 |
cttcgcttgtcaaaccaaaatatccgggacaaagaacaattgctaagtgaaaagggagagagc |
41805111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 41798798 - 41798877
Alignment:
| Q |
212 |
ccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatact |
291 |
Q |
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| T |
41798798 |
ccgctaacaatgaagcttttcatgaaactatcacaagtgttaaagtgtgtgtcaacagtgtgatatctgggatagatact |
41798877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 41798656 - 41798718
Alignment:
| Q |
111 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
173 |
Q |
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| T |
41798656 |
cttcgcctgtcaaaccaaaagctccgggttacagaacaattgctaagtgaaaaggaagagagc |
41798718 |
T |
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