View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_high_14 (Length: 364)
Name: NF17973_high_14
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 188 - 346
Target Start/End: Complemental strand, 39883555 - 39883393
Alignment:
| Q |
188 |
agtcgagcttccgttgctcgtaaaatatgatccatctatattaagtttgaatcgcccaggaggatggacttaattaa----ttgatgtgcattattgatt |
283 |
Q |
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| T |
39883555 |
agtcgagcttccgttactcgtaaaatatgatccatctatattaagtttgaatcgcccaagaggatggacttaattatgcttttgatgtgcattattgatt |
39883456 |
T |
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| Q |
284 |
ccctagatgccttgggcgcttgcaattttgttataatattatgacgtgattgttaaccgaact |
346 |
Q |
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| T |
39883455 |
ccctagatgccttgggcgcttgcaattttgttacaatatcatgacgtgattgttaaccgaact |
39883393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39883651 - 39883558
Alignment:
| Q |
1 |
tgtttgcaagtacaagctgcaaataagaaatatttggtataaccacattgaatcatattccttactatactttggaatcgaattcactgctacttt |
96 |
Q |
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| T |
39883651 |
tgtttgcaagtacaagctgcaaataagaaatatttggtataaccacattgaatcatattccttac--tactttggaatcgaattcactgctacttt |
39883558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 38250502 - 38250609
Alignment:
| Q |
148 |
acacaaatttaccatattgattatgaaccaaagcaccataagtcgagcttccgttgctcgtaaaatatgatccatctatattaagtttgaatcgcccagg |
247 |
Q |
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| T |
38250502 |
acacaaatttaccttgttggtcacgaatcaagccaccacaagccaagcttccgacgctggtaaaatatgatccatctacattgagtttgagtcgtccaag |
38250601 |
T |
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| Q |
248 |
aggatgga |
255 |
Q |
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| T |
38250602 |
aggatgga |
38250609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 42874843 - 42874750
Alignment:
| Q |
147 |
gacacaaatttaccatattgattatgaaccaaagcaccataagtcgagcttccgttgctcgtaaaatatgatccatctatattaagtttgaatc |
240 |
Q |
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| T |
42874843 |
gacacaaatttaccaaattgatcacgaatcaaactaccataagccgagctttcattgcttgtaaaatatgatccatctaaattgagttcgaatc |
42874750 |
T |
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