View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_high_18 (Length: 298)
Name: NF17973_high_18
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 9935184 - 9935463
Alignment:
| Q |
1 |
ttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcagaagctgaaatttc |
100 |
Q |
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| T |
9935184 |
ttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcagaagctgaaatttc |
9935283 |
T |
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| Q |
101 |
ctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgttactactggtgt |
200 |
Q |
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| T |
9935284 |
ctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgttactactggtgt |
9935383 |
T |
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| Q |
201 |
tggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtg |
280 |
Q |
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| T |
9935384 |
tggacaacatcaaatgtgggctgctcaattctacaaatacaagagacctaggcagtggttaacttctggtggacttggtg |
9935463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 3472799 - 3472867
Alignment:
| Q |
192 |
tactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggtt |
260 |
Q |
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| T |
3472799 |
tactggtgttggacaacatcagatgtgggctgctcagttttataggtacaagagaccaaggcagtggtt |
3472867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 45477130 - 45477409
Alignment:
| Q |
1 |
ttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcagaagctgaaatttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
45477130 |
ttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaagcttgattttgaggcatggaggcaggagttgaatgtgcagaagttaaaatttc |
45477229 |
T |
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| Q |
101 |
ctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgttactactggtgt |
200 |
Q |
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|||||| |||||||| ||||||| |||| ||||||||||| ||||| ||| || ||||||| ||||| || |||||||| |||||||||| ||||||||| |
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| T |
45477230 |
ctcttggttttaagacatttgaggatgctatttcgcctcagtatgctattcaggtgcttgatgagttgacgaatggtgacgctattgttagtactggtgt |
45477329 |
T |
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| Q |
201 |
tggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtg |
280 |
Q |
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| T |
45477330 |
tggacagcatcaaatgtggtctgctcagttttacaagtataagagacctaggcagtggttaacttctggtggacttggtg |
45477409 |
T |
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