View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_high_22 (Length: 245)
Name: NF17973_high_22
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 30173095 - 30173328
Alignment:
| Q |
1 |
tatattatgatccatcaaaaaggtcatagattggatnnnnnnnncaccatgtgacattaaataaaatactttattaattaactagtatagtattgagatt |
100 |
Q |
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| T |
30173095 |
tatattatgatccatcaaaaaggtcatagattggataaaaaaaacaccatgtgacattaaataaaatactttattaattaactagtatagtattgagatt |
30173194 |
T |
|
| Q |
101 |
aagacacacacat--------acatgtatgtgtatataaagagtgtgatagaggttagagtaattcacattcatttctttatcaaaaagaattcacattc |
192 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30173195 |
aagacacacacatacatacatacatgtatgtgtatataaagagtgtgatagaggttagagtaattcacattcatttctttatcaaaaagaatttacattc |
30173294 |
T |
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| Q |
193 |
atttcattattcatatactgatcatggggaaagagtt |
229 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
30173295 |
atttcattattcatatac---tcatggggaaagagtt |
30173328 |
T |
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