View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_high_3 (Length: 549)
Name: NF17973_high_3
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 16905926 - 16906372
Alignment:
| Q |
1 |
ataactatcaatattaacttggataatctcattgcactaaatcttgtttcaaaaatagcaagnnnnnnnntgagtttggcaaagaaaaggattgataaaa |
100 |
Q |
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| T |
16905926 |
ataactatcaatatcaacttggataatctcattgcactaaatcttgtttcaaaaatagcaagaaaaaaa-tgagtttggtaaagaaaag-attgataaaa |
16906023 |
T |
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| Q |
101 |
tgactagagatggttagatagaga------cagatagaaaaggggaagatcatgtacttagtgagtgaag---acaaagcaaaaggaattggtgatgatg |
191 |
Q |
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| T |
16906024 |
tgactagagatagtgagatagagatagagacagatagaaaaggggaagatcatgtacttagtgagtgaagaagacaaagcaaaaggaattggtgatgatg |
16906123 |
T |
|
| Q |
192 |
atattagtgaaaaaggatataaggggtagaattgagaaaaagtgagatattaaaggaataggacattaactatggtacctcggatatgcagttaaagaga |
291 |
Q |
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| T |
16906124 |
atattagtgaaaaaagatataaggggtagaattgagaaaaagtgagatattaaaggaataggacattaactatggtacctcggatatgcagttaaagaga |
16906223 |
T |
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| Q |
292 |
ccttgatacatcacaatttggtcagaaattgtaccaaacctcattaattgacttcaattcaacttgaccaatgtcaatttacaaattacatttaaga-ta |
390 |
Q |
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| T |
16906224 |
ccttgatacatcacaatttggtcagaaattgtaccaaacctcattaattgacttcaattcaacttgaccaatgtcaatttacaaattacatttaagattt |
16906323 |
T |
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| Q |
391 |
nnnnnnnacatatattgtagagacaaatagctcaagttgagttggtacc |
439 |
Q |
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| T |
16906324 |
tttttttacatatattgtagagacaaaaagctcaagttgagttggtacc |
16906372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 457 - 532
Target Start/End: Original strand, 16906357 - 16906436
Alignment:
| Q |
457 |
aagttgagttggtacctttgagcttaaata----gtgctcttaaatttgaatccaaccctaaaatgaactaagttaaaac |
532 |
Q |
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| T |
16906357 |
aagttgagttggtacctttgagcttaattaagtagtgctcttaaatttgaatccaaccctaaaatgaactaagttaaaac |
16906436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 52605256 - 52605369
Alignment:
| Q |
247 |
gaataggacattaactatggtacctcggatat--gcagttaaaga----gaccttgatacatcacaa---tttggtcagaaattgtaccaaacctcatta |
337 |
Q |
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| T |
52605256 |
gaatgggacattaactatggtacctcggatatatgcagtaaaagactttgaatttgatacatcacatctctttggtcagaaatttcaccaaacctcatta |
52605355 |
T |
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| Q |
338 |
attgacttcaattc |
351 |
Q |
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||| |||||||||| |
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| T |
52605356 |
attcacttcaattc |
52605369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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