View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_high_8 (Length: 461)
Name: NF17973_high_8
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 37 - 359
Target Start/End: Complemental strand, 6849339 - 6849017
Alignment:
| Q |
37 |
cttgtagatcgctgagatgggttgagagaaacaggggatttgggattcttggatgtggttggacgtgaaggtggattaggtttgagggagagggaaatgt |
136 |
Q |
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| T |
6849339 |
cttgtagatcgacgagatggtttgagagaaacaggggatttgggcttcttggatgcggttggacgtgaaggtggattaggtttgagggagagcgaaatgt |
6849240 |
T |
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| Q |
137 |
cgaaaagaccaaattttcccattctttcacgattttctcggattctttcttctcttgtgagctcgtattcagactttttgtttttgtgatctttcatcgg |
236 |
Q |
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| T |
6849239 |
cgaaaagacccaattttcccattctttcacgattttctcggattctttcttctcttgagagctcgtattcagactttttgtttttgtgatctttcatcgg |
6849140 |
T |
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| Q |
237 |
gatttcaatttcagattgaggaggattctcaacaatttctctgcgacttcgctttcgcagagtaggcattgttaatgttgtagcggcagctttactttga |
336 |
Q |
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| T |
6849139 |
gatttcaatttcagattgaggaggattctcaacaatttctctgcgacttcgctttcgcagagtaggcattgttaatgttgtagcggcagctttactttga |
6849040 |
T |
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| Q |
337 |
actagggtgtgaatcacttgacc |
359 |
Q |
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| T |
6849039 |
actggagtgtgaatcacttgacc |
6849017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 6887711 - 6887619
Alignment:
| Q |
118 |
ttgagggagagggaaatgtcgaaaagaccaaattttcccattctttcacgattttctcggattctttcttctcttgtgagctcgtattcagac |
210 |
Q |
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| T |
6887711 |
ttgagggaaagtgaaatgtcgagaatacccaattttcccattctttcacgattttcacggattcgttcttctcttgagagttcgtattcagac |
6887619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 6858649 - 6858558
Alignment:
| Q |
118 |
ttgagggagagggaaatgtcgaaaagaccaaattttcccattctttcacgattttctcggattctttcttctcttgtgagctcgtattcaga |
209 |
Q |
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| T |
6858649 |
ttgagggaaagtgaaatgtcgagaatacccaattttcccattctttcgtgattttcgcggattctttcttctcttgagagttcgtattcaga |
6858558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 53843071 - 53843008
Alignment:
| Q |
383 |
acagagaaactctgttttttacttttcacccatcgttcaattccgtctcaaatgttatctttca |
446 |
Q |
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| T |
53843071 |
acagagaaactctgttttttacttttcacccatcgttcaatttcgtctcaaatgttatctttca |
53843008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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