View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_high_9 (Length: 428)
Name: NF17973_high_9
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 1242089 - 1241675
Alignment:
| Q |
1 |
cttcaacttcaagaaatcacatattttaaaccttttgtggacacactagacacaacaaaatcctttccaacgcacatgatctggtatctaatagaaaaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1242089 |
cttcaacttcaagaaatcacatattttaaaccttttgtggacac--tagacacaacaaaatcctctccaacgcacatgatctggtatctaatagaaaaag |
1241992 |
T |
|
| Q |
101 |
gaattgttggtaatgattggaaggcaatgattggaatgttcctaatttttctaattactgagcagaagacgaagttgcttgcagctgaataagatatata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
1241991 |
gaattgttggtaatgattggaaggcaatgattggaatgttcctaatttttctaattactgagcagaatacgaagttgcttgcagctgaataag----ata |
1241896 |
T |
|
| Q |
201 |
tcttgtgatgagagaatatgcagatccggtggtttttgaagcggggagaggctacagtaaagtcttgcaatgtagcaaactgagtaaattgcagtggttt |
300 |
Q |
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| T |
1241895 |
tcttgtgatgagagaatatgcagatccggtggtttttgaagcggggagaggctacagtaaagtcttgcaatgtagcaaactgagtaaattgcagtggttt |
1241796 |
T |
|
| Q |
301 |
ttacaacaactgctccatagatataataggnnnnnnnnatgtgaagtgggccacaatatgggttggagttatgtgaaattagtgctagagtttggaatta |
400 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241795 |
ttacaacaactgctccatagataaaataggttttttttatgtgaagtgggccacaatatgggttggagttatgtgaaattagtgctagagtttggaatta |
1241696 |
T |
|
| Q |
401 |
tatgcttaattggatcctttg |
421 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
1241695 |
tatgcttaatcggatcctttg |
1241675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 472649 - 472331
Alignment:
| Q |
1 |
cttcaacttcaagaaatcacatattttaaaccttttgtggacacactagacacaacaaaatcctttccaacgcacatgatctggtatctaata--gaaaa |
98 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| ||||||||| ||||| |
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| T |
472649 |
cttcaacttcaagaaatcatagattttaaaccttttgtggacac--tagacacaacaaaatcctctccaactaacatt-tctgatatctaatatagaaaa |
472553 |
T |
|
| Q |
99 |
aggaattgttggta---------atgattgga----aggcaatgattggaatgttcctaatttttctaattactgagcagaagacgaagttgcttgcagc |
185 |
Q |
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|||||||||||||| | ||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
472552 |
aggaattgttggtatgtagtaatactattcaacaaaatgcaatgattggaatgttcctaatttttctaattactgagcagaaggagaagttgcttgcagc |
472453 |
T |
|
| Q |
186 |
tgaataagatatatatcttgtgatgagagaatatgcagatccggtggtttttgaagcggggagaggctacagtaaagtcttgcaatgtagcaaactgagt |
285 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
472452 |
tgaataagatat----cttgtgatgagagaatatgcagatccggtggtttttgaagcggggagaggctactgtaaagtattgcaatgtagcaaactgagt |
472357 |
T |
|
| Q |
286 |
aaattgcagtggtttttacaacaact |
311 |
Q |
| |
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||||||| |||||||||||||||||| |
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|
| T |
472356 |
aaattgcggtggtttttacaacaact |
472331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 124 - 421
Target Start/End: Original strand, 41526736 - 41527046
Alignment:
| Q |
124 |
gcaatgattggaatgttcctaatttttctaattactgagcagaagacgaagttgcttgca----gctgaataagatatatatcttgtgatgagagaatat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
41526736 |
gcaatgattggaatgttcctaatttttctaattactgagcagaaggagaagttgcttgcatgcagctgaataagatat----cttatgatgagagaatat |
41526831 |
T |
|
| Q |
220 |
gcagatccggtggtttttgaagcggggagaggctacagtaaagtcttgcaat---gtagcaaactgagtaaattgcagtggtttttacaa--------ca |
308 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
41526832 |
gcagatcaggtggtttttgaagcggggagaggctacagtaaagtattgcaatgtagtagcaaactgagtaaattgcagtggtttttacaacaactatgca |
41526931 |
T |
|
| Q |
309 |
actgctccatagatataat-aggnnnnnnnnatgtgaagtgggcc-acaatatgggttggagttatgtgaaattagtgctagagtttggaattatatgct |
406 |
Q |
| |
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||||||||||||||||| | || |||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41526932 |
actgctccatagatatattaagttgttttttatgtgaagtgggccaataatataggttggatttatgtgaaattagtgctagagtttggaattatatgct |
41527031 |
T |
|
| Q |
407 |
taattggatcctttg |
421 |
Q |
| |
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|||| ||||||||| |
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| T |
41527032 |
taatcagatcctttg |
41527046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 41521966 - 41522034
Alignment:
| Q |
1 |
cttcaacttcaagaaatcacatattttaaaccttttgtggacacactagacacaacaaaatcctttccaac |
71 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
41521966 |
cttcaacttcaagaaatcatagattttaaaccttttgtgg--acactagacacaacaaaatcctctccaac |
41522034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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