View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_low_1 (Length: 780)
Name: NF17973_low_1
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 37463842 - 37464209
Alignment:
| Q |
1 |
agagggaggtctgttgtgcgacgggggagataagacaaacgcaaaattgattcgtgaatgcatagtgctcagatgaatggcaatgaacaatcatcaaatg |
100 |
Q |
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| T |
37463842 |
agagggaggtctgttgtgcgacgggggagattggacaaacgtaaaattgattcgtgaatgcaaagtgctcggatgaatggcaaggaacaatcatcaaatg |
37463941 |
T |
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| Q |
101 |
tggcagtgactacgatggcctccttttactctactaattttctagaaaaaatttcttatgttaagttacgaaagggttttatggtctatggaattttgtc |
200 |
Q |
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| T |
37463942 |
tggcagtgactacaatggcctccttttactctactaattttctagaaaaaacttcttatgttaagttacgaaaggattttatggtctatgggattttgtc |
37464041 |
T |
|
| Q |
201 |
agatgtctatatgttgctcaaaattgaaacactcatgatcaaatttatgcgtttgtgaggttcatcaatgttatggacgcgaggaagtttacaaaagcct |
300 |
Q |
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| T |
37464042 |
agatgtctatatgttgctcaaaattgaaacactcatggtcaagcttatgcgtttgtgaggttcatcaatgttatggacgcgaggaagttgacaaaagcct |
37464141 |
T |
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| Q |
301 |
tggataatgtttgttttggttactatcgtgttgggggaaaaggaggggatcaagatggttttggaggg |
368 |
Q |
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| T |
37464142 |
tggataatgtttattttggttactatcgtgttggggcaaaaggaggggatcaagatggttttggaggg |
37464209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 480 - 763
Target Start/End: Original strand, 37467988 - 37468271
Alignment:
| Q |
480 |
ttcctacaccgccttactccagtagatgcgattcttatccaaaaactacgcgccttattgcacgtcaaactccctccacagcattcccgtcatcacaacc |
579 |
Q |
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| T |
37467988 |
ttcctacaccgccttactccagtagatgcgattcttatccaaaaactacgcgccttattgcacgtcaaactccctccacagctttcccgtcatcacaacc |
37468087 |
T |
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| Q |
580 |
gtcgatcacattactaacccactcaatcaacggctgaaaacgtttcttaccaatcatcacgagaaatgcatgaaaaggaaccccatatataaacaccgtt |
679 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37468088 |
gtcgatcacattactaacccactcaatcaacggctgaaaacgtttcttaccaatcatcacgagaaatgcatgaaaaggaaccccatatataaacaccgtt |
37468187 |
T |
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| Q |
680 |
gcttcttcttcagtaactgtaattccagatttcttggaaacttatcaaaacgcgattccttcgctctcgaaagatgaagcattc |
763 |
Q |
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| T |
37468188 |
gcttcttcttcggtaactgtaattccagatttcttggaaacttatcaaaacgcgattccttcgctctcgaaagatgaagcattc |
37468271 |
T |
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