View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17973_low_11 (Length: 424)

Name: NF17973_low_11
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17973_low_11
NF17973_low_11
[»] chr7 (10 HSPs)
chr7 (99-282)||(32414573-32414756)
chr7 (345-409)||(32414446-32414510)
chr7 (71-229)||(30597147-30597311)
chr7 (78-114)||(6845249-6845285)
chr7 (81-115)||(6849822-6849856)
chr7 (78-115)||(6890258-6890295)
chr7 (156-208)||(6890159-6890211)
chr7 (156-222)||(6849709-6849775)
chr7 (152-229)||(45493091-45493168)
chr7 (156-204)||(6845153-6845201)
[»] chr4 (11 HSPs)
chr4 (148-270)||(52187747-52187870)
chr4 (74-135)||(36590344-36590405)
chr4 (158-257)||(36910479-36910578)
chr4 (158-224)||(18365178-18365244)
chr4 (158-224)||(36597681-36597747)
chr4 (149-219)||(36655974-36656044)
chr4 (158-235)||(18084001-18084078)
chr4 (158-229)||(36630268-36630339)
chr4 (158-229)||(36664935-36665006)
chr4 (78-135)||(36627073-36627130)
chr4 (159-235)||(36636001-36636077)
[»] chr2 (7 HSPs)
chr2 (71-236)||(43863044-43863215)
chr2 (152-236)||(43866604-43866688)
chr2 (149-275)||(38990017-38990144)
chr2 (150-233)||(43874280-43874363)
chr2 (74-112)||(38990187-38990225)
chr2 (74-115)||(43866520-43866561)
chr2 (74-122)||(43874198-43874246)
[»] chr3 (18 HSPs)
chr3 (78-236)||(777179-777343)
chr3 (158-229)||(7119797-7119868)
chr3 (80-252)||(7034139-7034317)
chr3 (87-135)||(7119981-7120029)
chr3 (152-247)||(8032351-8032446)
chr3 (78-120)||(477086-477128)
chr3 (74-121)||(1187635-1187682)
chr3 (83-122)||(1205396-1205435)
chr3 (83-122)||(1303667-1303706)
chr3 (148-207)||(481953-482015)
chr3 (84-135)||(7127213-7127264)
chr3 (69-112)||(7179049-7179092)
chr3 (74-112)||(8399991-8400029)
chr3 (101-135)||(13489899-13489933)
chr3 (154-223)||(7127014-7127083)
chr3 (156-207)||(476993-477047)
chr3 (87-135)||(7103050-7103098)
chr3 (156-224)||(13460643-13460711)
[»] chr5 (7 HSPs)
chr5 (36-246)||(7022962-7023176)
chr5 (75-232)||(28092037-28092200)
chr5 (156-229)||(25216877-25216950)
chr5 (156-229)||(25281032-25281105)
chr5 (149-229)||(25070180-25070260)
chr5 (149-229)||(25128155-25128235)
chr5 (77-134)||(7975746-7975803)
[»] scaffold0438 (2 HSPs)
scaffold0438 (152-247)||(6271-6369)
scaffold0438 (77-115)||(6409-6447)
[»] chr8 (9 HSPs)
chr8 (152-247)||(26291889-26291987)
chr8 (152-247)||(26305146-26305244)
chr8 (152-247)||(26338501-26338599)
chr8 (149-229)||(35336714-35336794)
chr8 (152-229)||(27700906-27700983)
chr8 (78-133)||(27700733-27700788)
chr8 (77-115)||(26292027-26292065)
chr8 (77-115)||(26305284-26305322)
chr8 (77-115)||(26338639-26338677)
[»] chr6 (2 HSPs)
chr6 (159-224)||(33839361-33839426)
chr6 (87-135)||(33839157-33839205)
[»] chr1 (3 HSPs)
chr1 (156-229)||(28927456-28927529)
chr1 (160-247)||(42601950-42602037)
chr1 (152-229)||(14287949-14288026)
[»] scaffold0210 (1 HSPs)
scaffold0210 (189-229)||(15280-15320)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 99 - 282
Target Start/End: Complemental strand, 32414756 - 32414573
Alignment:
Q  99 ttttgaagcaaaaagtcgaccattccatcaggtatggttaggtaatttcttattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaata 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414756 ttttgaagcaaaaagtcgaccattccatcaggtatggttaggtaatttcttattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaata 32414657  T
Q  199 aatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaatttatgcaaatcatatttttgacaaaatttatta 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414656 aatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaatttatgcaaatcatatttttgacaaaatttatta 32414573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 32414510 - 32414446
Alignment:
Q  345 ccgctaaaattttattgaaccaaaccattttgtaaagtacctcaagagtagttgaagaaactatt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32414510 ccgctaaaattttattgaaccaaaccattttgtaaagtacctcaagagaagttgaagaaactatt 32414446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 229
Target Start/End: Original strand, 30597147 - 30597311
Alignment:
Q  71 tacgatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt-aggtaat-----ttcttattttcagtgacttc 164  Q
    |||||| ||||||||||||||||||||||||||||| |||||||  | | |||||| ||| |||| | |||  ||     || | | ||| ||| |||||    
T  30597147 tacgatttcaacctttgctgagggtgagttttgaagtaaaaagtacaacgttccattaggcatggatgagggtatgcgcattttcactttaagtaacttc 30597246  T
Q  165 aagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    ||||||||||||||| | ||||  |||||||||||||||||||| || || ||||||||||||||    
T  30597247 aagttacacaaggaatggaactcaaccttcaataaatcaggaactaacgagagaacctaatcaat 30597311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 6845285 - 6845249
Alignment:
Q  78 tcaacctttgctgagggtgagttttgaagcaaaaagt 114  Q
    |||||||||||||||||||||||||||||||||||||    
T  6845285 tcaacctttgctgagggtgagttttgaagcaaaaagt 6845249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 6849856 - 6849822
Alignment:
Q  81 acctttgctgagggtgagttttgaagcaaaaagtc 115  Q
    |||||||||||||||||||||||||||||||||||    
T  6849856 acctttgctgagggtgagttttgaagcaaaaagtc 6849822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 6890295 - 6890258
Alignment:
Q  78 tcaacctttgctgagggtgagttttgaagcaaaaagtc 115  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6890295 tcaacctttgttgagggtgagttttgaagcaaaaagtc 6890258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 6890211 - 6890159
Alignment:
Q  156 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaac 208  Q
    |||||||||||| ||||||||||| | ||||  ||||||||||||||||||||    
T  6890211 agtgacttcaagctacacaaggaatgaaactcaaccttcaataaatcaggaac 6890159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 6849775 - 6849709
Alignment:
Q  156 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacct 222  Q
    |||||||||||||  ||||||||| | || |  |||||||||||||||||||| ||||| |||||||    
T  6849775 agtgacttcaagtcccacaaggaatggaattcaaccttcaataaatcaggaactaaggagagaacct 6849709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 45493091 - 45493168
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    ||||||||||||||| |||| ||| ||||| ||||  | ||||||||||||||| |   |||| ||||||||||||||    
T  45493091 tttcagtgacttcaaattacgcaaagaagggaactcgatcttcaataaatcaggtattgaggagagaacctaatcaat 45493168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 6845201 - 6845153
Alignment:
Q  156 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcag 204  Q
    ||||||||||| |||||||||||| | ||||  ||||||||||||||||    
T  6845201 agtgacttcaaattacacaaggaatggaactcaaccttcaataaatcag 6845153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 52187870 - 52187747
Alignment:
Q  148 ttattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 247  Q
    |||||||||||||||||||| ||||||||||| | ||||  |||||||||||||||||||| || |||||||||||| |||||| |||| |||| |||||    
T  52187870 ttattttcagtgacttcaaggtacacaaggaatggaactcaaccttcaataaatcaggaactaaagaaagaacctaagcaatcaagaagtattacgatca 52187771  T
Q  248 attt-atgcaaatcatatttttga 270  Q
     ||| |||||| || |||||||||    
T  52187770 gtttaatgcaagtcctatttttga 52187747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 36590344 - 36590405
Alignment:
Q  74 gatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 135  Q
    ||||||||| | |||||| ||||||||||||| ||||||||| || ||||||||||||||||    
T  36590344 gatgtcaacttctgctgacggtgagttttgaatcaaaaagtccactattccatcaggtatgg 36590405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 36910578 - 36910479
Alignment:
Q  158 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaatttatgcaa 257  Q
    ||||||||||||||| || ||| | || || |||| ||||||||||||||| ||||| |||| ||||  ||| |||| || ||||||||| |||||||||    
T  36910578 tgacttcaagttacataaagaatggaatttaacctccaataaatcaggaactaaggacagaatctaagaaatgaggatgagttaggatcagtttatgcaa 36910479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 18365244 - 18365178
Alignment:
Q  158 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaa 224  Q
    |||||||||||||||||| ||||  ||||| |||| ||||||||||||||| ||||| |||| ||||    
T  18365244 tgacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatctaa 18365178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 36597681 - 36597747
Alignment:
Q  158 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaa 224  Q
    |||||||||||||||||| ||||  ||||| |||| ||||||||||||||| ||||| |||| ||||    
T  36597681 tgacttcaagttacacaaagaagtgaacttaacctccaataaatcaggaacaaaggagagaatctaa 36597747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 36655974 - 36656044
Alignment:
Q  149 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaa 219  Q
    ||||| ||||||||||||||||||||| ||||| | ||| | ||||||||||| |||||| ||||| ||||    
T  36655974 tatttccagtgacttcaagttacacaaagaaggtatcttaaacttcaataaattaggaactaaggagagaa 36656044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 18084078 - 18084001
Alignment:
Q  158 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaa 235  Q
    ||||||||||||||| || ||||| | ||| |||| ||||||||||||||| ||||| |||| |||| |||| |||||    
T  18084078 tgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggacagaatctaagcaataaggaa 18084001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 36630339 - 36630268
Alignment:
Q  158 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    |||| |||||||||| || ||||| | ||| |||| ||||||||||||||||||||| |||| |||| ||||    
T  36630339 tgacctcaagttacaaaaagaagggagcttaacctccaataaatcaggaaccaaggagagaatctaagcaat 36630268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 36664935 - 36665006
Alignment:
Q  158 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    ||||||||||||||| || ||||| | ||| |||| ||||||||||||||| ||||| |||| |||| ||||    
T  36664935 tgacttcaagttacataacgaagggagcttaacctccaataaatcaggaactaaggagagaatctaagcaat 36665006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 36627073 - 36627130
Alignment:
Q  78 tcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 135  Q
    ||||| ||||| || || |||||||||||||| |||| ||| ||||||||||||||||    
T  36627073 tcaacttttgcagacggcgagttttgaagcaagaagttgactattccatcaggtatgg 36627130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 36636001 - 36636077
Alignment:
Q  159 gacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaa 235  Q
    ||||||||||||||||| ||||||| ||| ||||  | |||||||||||| || || |||| |||| |||| |||||    
T  36636001 gacttcaagttacacaaagaaggcagcttaacctctagtaaatcaggaactaatgagagaatctaaacaattaggaa 36636077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 43863044 - 43863215
Alignment:
Q  71 tacgatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt--aggta--atttctt--attttcagtgacttc 164  Q
    |||||||||||||||||  |||||||||||||||| ||||||||| |||||| | ||| |||| | |  |||||  |   |||  |||||||||||||||    
T  43863044 tacgatgtcaacctttgtcgagggtgagttttgaatcaaaaagtctaccatttcgtcacgtatcgatgaaggtatgaccactttaattttcagtgacttc 43863143  T
Q  165 aagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaag 236  Q
    ||||||||||||||||| | ||  |||||||||||| || |||| ||||||||||||||| |||||||||||    
T  43863144 aagttacacaaggaagggagctctaccttcaataaaccacgaactaaggaaagaacctaagcaatcaggaag 43863215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 43866604 - 43866688
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaag 236  Q
    |||||| |||||||||||| |||||||||| ||||  ||||||||||||||| |||| |||||||| |||||| |||||||||||    
T  43866604 tttcagcgacttcaagttaaacaaggaagggaactcaaccttcaataaatcacgaactaaggaaagcacctaagcaatcaggaag 43866688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 38990144 - 38990017
Alignment:
Q  149 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaa 248  Q
    ||||||||| |||||||||||| |||||| | | | ||   ||||||||||||||||||  || |||||||||||| ||||||||||| |||| |||||     
T  38990144 tattttcagggacttcaagttatacaagggatggagctcagccttcaataaatcaggaaataaagaaagaacctaagcaatcaggaagtattacgatcag 38990045  T
Q  249 ttt-atgcaaatcatatttttgacaaaa 275  Q
    ||| |||||| |||||||||||| ||||    
T  38990044 tttaatgcaagtcatatttttgaaaaaa 38990017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 43874280 - 43874363
Alignment:
Q  150 attttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcagg 233  Q
    |||||| ||||||||||||||||||||||| | | ||  ||| |||| |||| | |||| |||| |||||||||| ||||||||    
T  43874280 attttcggtgacttcaagttacacaaggaaaggagctctaccgtcaacaaattacgaactaaggtaagaacctaagcaatcagg 43874363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 38990225 - 38990187
Alignment:
Q  74 gatgtcaacctttgctgagggtgagttttgaagcaaaaa 112  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  38990225 gatgtcaacctttgccgagggtgagttttgaatcaaaaa 38990187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 43866520 - 43866561
Alignment:
Q  74 gatgtcaacctttgctgagggtgagttttgaagcaaaaagtc 115  Q
    ||||||||||||||  |||||||||||||||| |||||||||    
T  43866520 gatgtcaacctttgtcgagggtgagttttgaatcaaaaagtc 43866561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 43874198 - 43874246
Alignment:
Q  74 gatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccatt 122  Q
    ||||||||||||||   ||||||||||||||| ||||||||| ||||||    
T  43874198 gatgtcaacctttgtcaagggtgagttttgaatcaaaaagtccaccatt 43874246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 777179 - 777343
Alignment:
Q  78 tcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt------aggtaatttcttattttcagtgacttcaagttac 171  Q
    ||||||||||| || ||||||||||||| ||| ||||| | |||||| |||||||| | |      |||||  || ||||||||| ||||||||||||||    
T  777179 tcaacctttgccgatggtgagttttgaatcaataagtctatcattccgtcaggtattgatgaagataggtatgtttttattttcaatgacttcaagttac 777278  T
Q  172 acaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaag 236  Q
    ||||| |||  |  |  || ||||||||||||||||||||||||||||||||| |||||| ||||    
T  777279 acaagtaagagagttcaacgttcaataaatcaggaaccaaggaaagaacctaagcaatcaagaag 777343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 7119868 - 7119797
Alignment:
Q  158 tgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||| ||||    
T  7119868 tgacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaagcaat 7119797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 252
Target Start/End: Complemental strand, 7034317 - 7034139
Alignment:
Q  80 aacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt-ag-----gtaatttcttattttcagtgacttcaagttacac 173  Q
    |||||||||||||||||||||||||||||||||||| || |||| | ||||||| | | ||     | |  ||| || ||||||| |||||||||||  |    
T  7034317 aacctttgctgagggtgagttttgaagcaaaaagtctactattcgaccaggtattgatgagcgtccgaaccttcctactttcagtaacttcaagttatgc 7034218  T
Q  174 aaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatcaattta 252  Q
    |||||||| | ||  |||||| |||  |||||||| ||||||||||||||| | ||||||||| |||||||||| ||||    
T  7034217 aaggaaggaagctcaaccttcgatagttcaggaactaaggaaagaacctaagccatcaggaagtattaggatcagttta 7034139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 7120029 - 7119981
Alignment:
Q  87 gctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 135  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  7120029 gctgaaggtgagttttgaagcaaaaagtcgactattccatcaggtatgg 7119981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 8032351 - 8032446
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 247  Q
    |||||||||||||||||||| ||||||||| ||||  ||| |||||||||||  |    |||||||||||||| |||||| |||| ||||||||||    
T  8032351 tttcagtgacttcaagttacgcaaggaagggaactcaaccgtcaataaatcataatttcaggaaagaacctaagcaatcatgaagtattaggatca 8032446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 477128 - 477086
Alignment:
Q  78 tcaacctttgctgagggtgagttttgaagcaaaaagtcgacca 120  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  477128 tcaacctttgctgagggtgagttttgaagcaaaaagtccacca 477086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 1187682 - 1187635
Alignment:
Q  74 gatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccat 121  Q
    ||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  1187682 gatgtgaacctttgccgagggtgagttttgaagcaaaaagtccaccat 1187635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 1205435 - 1205396
Alignment:
Q  83 ctttgctgagggtgagttttgaagcaaaaagtcgaccatt 122  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1205435 ctttgctgagggtgagttttgaagcaaaaagtccaccatt 1205396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 1303667 - 1303706
Alignment:
Q  83 ctttgctgagggtgagttttgaagcaaaaagtcgaccatt 122  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1303667 ctttgctgagggtgagttttgaagcaaaaagtccaccatt 1303706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 482015 - 481953
Alignment:
Q  148 ttattttcagtgacttcaagttac---acaaggaaggcaacttcaccttcaataaatcaggaa 207  Q
    ||||||||||||||||||||||||   |||||||||| | ||| | |||||||||||||||||    
T  482015 ttattttcagtgacttcaagttacacaacaaggaagggagcttaatcttcaataaatcaggaa 481953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 7127264 - 7127213
Alignment:
Q  84 tttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 135  Q
    ||||| || ||||||||||||||||||||||  || ||||||||||||||||    
T  7127264 tttgcagaaggtgagttttgaagcaaaaagtaaactattccatcaggtatgg 7127213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 7179092 - 7179049
Alignment:
Q  69 tatacgatgtcaacctttgctgagggtgagttttgaagcaaaaa 112  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||    
T  7179092 tatatgatgttaacctttgctgatggtgagttttgaagcaaaaa 7179049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 8399991 - 8400029
Alignment:
Q  74 gatgtcaacctttgctgagggtgagttttgaagcaaaaa 112  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  8399991 gatgttaacctttgctgatggtgagttttgaagcaaaaa 8400029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 13489899 - 13489933
Alignment:
Q  101 ttgaagcaaaaagtcgaccattccatcaggtatgg 135  Q
    ||||||||||||||| |||||||||||||||||||    
T  13489899 ttgaagcaaaaagtccaccattccatcaggtatgg 13489933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 7127083 - 7127014
Alignment:
Q  154 tcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaaccta 223  Q
    |||||||||||||||||| ||||||| | |  || |||||||| ||| ||||||| ||||| ||||||||    
T  7127083 tcagtgacttcaagttacgcaaggaatggagtttaaccttcaacaaaccaggaactaaggagagaaccta 7127014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 477047 - 476993
Alignment:
Q  156 agtgacttcaagttacacaa---ggaaggcaacttcaccttcaataaatcaggaa 207  Q
    ||||||||||||||||||||   |||||| | ||| |||||||||||||||||||    
T  477047 agtgacttcaagttacacaacaaggaagggagcttaaccttcaataaatcaggaa 476993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 7103050 - 7103098
Alignment:
Q  87 gctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 135  Q
    ||||| ||||||||||||||||||||||| |  ||||| ||||||||||    
T  7103050 gctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatgg 7103098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 13460711 - 13460643
Alignment:
Q  156 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaa 224  Q
    |||||||||||||||| ||| ||||  | ||| ||| ||||||||| |||||| ||||| |||||||||    
T  13460711 agtgacttcaagttacgcaaagaagagagcttaaccctcaataaattaggaactaaggagagaacctaa 13460643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 7023176 - 7022962
Alignment:
Q  36 aaaatttgaatgtgcatctcaccttaaccagtctatacgatgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 135  Q
    |||| |||||||  ||||| ||||  ||||||||||  |||||| ||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||    
T  7023176 aaaagttgaatgcacatctaacctcgaccagtctat--gatgtcgacctttgctgagggtgactttcgaagcaaaaagtcaactattccatcaggtatgg 7023079  T
Q  136 ttagg--taatt--tcttat--tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
     || |  | | |   | |||  | |||||||||||||||||||||||||||| | ||   || ||||||| | |||||| |||||||||||||||  |||    
T  7023078 ataagcatgagtcaacatatactctcagtgacttcaagttacacaaggaagggagctcagccatcaataagttaggaactaaggaaagaacctaagaaat 7022979  T
Q  230 caggaagaattaggatc 246  Q
    || || |||||||||||    
T  7022978 caagacgaattaggatc 7022962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 28092200 - 28092037
Alignment:
Q  75 atgtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatggtt--aggtaatttc----ttattttcagtgacttcaagt 168  Q
    |||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||| |  ||||  ||||    ||| |||||||||||||| ||    
T  28092200 atgtcaacctttgccgagggtgagttttgaatcaaaaagtccactattccatcaggtatggatgaaggttttttcctcattactttcagtgacttcaggt 28092101  T
Q  169 tacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcag 232  Q
    ||| ||| ||||  | ||  ||||||| |||||||| ||| ||| ||||||||||  |||||||    
T  28092100 tactcaaagaagagagctcaaccttcagtaaatcagaaactaagaaaagaacctaggcaatcag 28092037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 25216950 - 25216877
Alignment:
Q  156 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    ||||||||||||||| |||||| ||| ||||  |||||||||||||  ||||| | ||| ||||||||||||||    
T  25216950 agtgacttcaagttatacaaggtagggaactcaaccttcaataaatttggaactagggagagaacctaatcaat 25216877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 25281105 - 25281032
Alignment:
Q  156 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    ||||||||||||||| |||||| ||| ||||  |||||||||||||  ||||| | ||| ||||||||||||||    
T  25281105 agtgacttcaagttatacaaggtagggaactcaaccttcaataaatttggaactagggagagaacctaatcaat 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 25070260 - 25070180
Alignment:
Q  149 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    |||||| ||||||||||||||| |||||| ||| ||||  ||| |||| ||||| ||||| || || ||||||||||||||    
T  25070260 tattttaagtgacttcaagttatacaaggtagggaactcaaccgtcaacaaatccggaactaatgagagaacctaatcaat 25070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 25128235 - 25128155
Alignment:
Q  149 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    |||||| ||||||||||||||| |||||| ||| ||||  ||| |||| ||||| ||||| || || ||||||||||||||    
T  25128235 tattttaagtgacttcaagttatacaaggtagggaactcaaccgtcaacaaatccggaactaatgagagaacctaatcaat 25128155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 7975746 - 7975803
Alignment:
Q  77 gtcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatg 134  Q
    |||||| ||||| || ||||| ||||||||||| ||||| || |||||||||||||||    
T  7975746 gtcaacttttgccgaaggtgaattttgaagcaagaagtccactattccatcaggtatg 7975803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 6369 - 6271
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaa---tcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 247  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||   ||| || |  |||||||||||||| |||||| |||| ||||||||||    
T  6369 tttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcgtcatgagcgtaggaaagaacctaagcaatcatgaagtattaggatca 6271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 6447 - 6409
Alignment:
Q  77 gtcaacctttgctgagggtgagttttgaagcaaaaagtc 115  Q
    |||||||||||| || |||||||||||||||||||||||    
T  6447 gtcaacctttgcagaaggtgagttttgaagcaaaaagtc 6409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 26291987 - 26291889
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaa---tcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 247  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||   ||| || |  |||||||||||||| |||||| |||| ||||||||||    
T  26291987 tttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtattaggatca 26291889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 26305244 - 26305146
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaa---tcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 247  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||   ||| || |  |||||||||||||| |||||| |||| ||||||||||    
T  26305244 tttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtattaggatca 26305146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 26338599 - 26338501
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaa---tcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 247  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||   ||| || |  |||||||||||||| |||||| |||| ||||||||||    
T  26338599 tttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtattaggatca 26338501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 35336794 - 35336714
Alignment:
Q  149 tattttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    ||||| || |||||||||||||||||| ||||| | ||| |||| ||||||||||||||| ||||| ||||||||| ||||    
T  35336794 tatttccaatgacttcaagttacacaaagaagggagcttaacctccaataaatcaggaactaaggagagaacctaagcaat 35336714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 27700906 - 27700983
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    |||||| |||||||||||||| |||||||  ||||  |||||||||||||||||||| | ||| ||||||||| ||||    
T  27700906 tttcagcgacttcaagttacataaggaagaaaactcaaccttcaataaatcaggaactacggagagaacctaagcaat 27700983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 27700733 - 27700788
Alignment:
Q  78 tcaacctttgctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtat 133  Q
    ||||| |||||||| || |||||||||||||||||||| || || |||||||||||    
T  27700733 tcaacttttgctgaaggcgagttttgaagcaaaaagtcaactataccatcaggtat 27700788  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 26292065 - 26292027
Alignment:
Q  77 gtcaacctttgctgagggtgagttttgaagcaaaaagtc 115  Q
    |||||||||||| || |||||||||||||||||||||||    
T  26292065 gtcaacctttgcagaaggtgagttttgaagcaaaaagtc 26292027  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 26305322 - 26305284
Alignment:
Q  77 gtcaacctttgctgagggtgagttttgaagcaaaaagtc 115  Q
    |||||||||||| || |||||||||||||||||||||||    
T  26305322 gtcaacctttgcagaaggtgagttttgaagcaaaaagtc 26305284  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 26338677 - 26338639
Alignment:
Q  77 gtcaacctttgctgagggtgagttttgaagcaaaaagtc 115  Q
    |||||||||||| || |||||||||||||||||||||||    
T  26338677 gtcaacctttgcagaaggtgagttttgaagcaaaaagtc 26338639  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 33839361 - 33839426
Alignment:
Q  159 gacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaa 224  Q
    ||||||||||||||||| ||||| | ||| |||| ||||||||||||||| ||||| |||| ||||    
T  33839361 gacttcaagttacacaaagaaggaagcttaacctccaataaatcaggaactaaggagagaatctaa 33839426  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 33839157 - 33839205
Alignment:
Q  87 gctgagggtgagttttgaagcaaaaagtcgaccattccatcaggtatgg 135  Q
    ||||| ||||||||||||||||| ||||| || ||||||||||||||||    
T  33839157 gctgacggtgagttttgaagcaagaagtccactattccatcaggtatgg 33839205  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 28927456 - 28927529
Alignment:
Q  156 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    ||||||||||| |||||||||||| | ||||  ||||| |||||||||||||  ||||  ||||||||||||||    
T  28927456 agtgacttcaatttacacaaggaatggaactcaaccttgaataaatcaggaattaaggtgagaacctaatcaat 28927529  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 42601950 - 42602037
Alignment:
Q  160 acttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 247  Q
    |||||||||||||||| ||||  | ||| |||| ||||||||||||||| ||||| |||| ||||  ||| |||  ||||||||||||    
T  42601950 acttcaagttacacaacgaagtgagcttaacctccaataaatcaggaactaaggagagaatctaagaaatgagggtgaattaggatca 42602037  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 14287949 - 14288026
Alignment:
Q  152 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    ||||||||||||||| |||| ||| ||||| ||||  | ||||||||||||||| |   |||| ||||||||||||||    
T  14287949 tttcagtgacttcaaattacgcaaagaagggaactcaatcttcaataaatcaggtattgaggagagaacctaatcaat 14288026  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 15280 - 15320
Alignment:
Q  189 accttcaataaatcaggaaccaaggaaagaacctaatcaat 229  Q
    |||||||||||||||||||| ||||| ||||||| ||||||    
T  15280 accttcaataaatcaggaactaaggagagaacctgatcaat 15320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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