View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_low_13 (Length: 419)
Name: NF17973_low_13
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 68 - 404
Target Start/End: Complemental strand, 36358204 - 36357868
Alignment:
| Q |
68 |
ttagctacacctgcaaatcttgtgcttggattccaaatattttggatcagaacaaacttttgacannnnnnnnnnnngatatggatcataagactaagtt |
167 |
Q |
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| T |
36358204 |
ttagctacacctgcaaatcttgtgcttggattccaaatattttggatcagaacaaacttttgacattttttctttttgatatggatcataagactaagtt |
36358105 |
T |
|
| Q |
168 |
atggatggtgtttttcttcttctcaagtgcaacatattgtgttgttgggaagccccaagtaccatgtcttttcatttttggagattctttatcagacagt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36358104 |
atggatggtgtttttcttcttctcaagtgcaacatattgtgttgttgggaagccccaagtaccatgtcttttcatttttggagattctttatcagacagt |
36358005 |
T |
|
| Q |
268 |
ggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtcctaccggaagatttaccaatggccgta |
367 |
Q |
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| T |
36358004 |
ggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtcctaccggaagatttaccaatggccgta |
36357905 |
T |
|
| Q |
368 |
cttcagttgacataatcagtaatattttctcatactt |
404 |
Q |
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||||| |||||||||||||||||||||||||| |||| |
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| T |
36357904 |
cttcaattgacataatcagtaatattttctcacactt |
36357868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 36358250 - 36358219
Alignment:
| Q |
18 |
caaggtcatacaaatttttgtctttcatctct |
49 |
Q |
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| T |
36358250 |
caaggtcatacaaatttttgtctttcatctct |
36358219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 389
Target Start/End: Complemental strand, 5573573 - 5573428
Alignment:
| Q |
244 |
tttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgggattgattttccagctggtccta |
343 |
Q |
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| T |
5573573 |
tttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaa |
5573474 |
T |
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| Q |
344 |
ccggaagatttaccaatggccgtacttcagttgacataatcagtaa |
389 |
Q |
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| T |
5573473 |
ccggaagatttaccaacggtagaactgcaattgacataataagtaa |
5573428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 221 - 388
Target Start/End: Complemental strand, 5576758 - 5576591
Alignment:
| Q |
221 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgg |
320 |
Q |
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||||||| ||||||||||| || ||||||||||||||||| || ||||||||||| || ||||| | ||| ||| ||| |||||||| |||||||| |
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| T |
5576758 |
cccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatgg |
5576659 |
T |
|
| Q |
321 |
gattgattttccagctggtcctaccggaagatttaccaatggccgtacttcagttgacataatcagta |
388 |
Q |
| |
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| T |
5576658 |
aattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagta |
5576591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 389
Target Start/End: Complemental strand, 5587127 - 5586959
Alignment:
| Q |
221 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgg |
320 |
Q |
| |
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||||||| || ||||| || || |||||||| |||||||| || |||||||||||||||||||| ||||| ||| ||| |||||||| || ||||| |
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| T |
5587127 |
cccaagtgccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatgg |
5587028 |
T |
|
| Q |
321 |
gattgattttccagctggtcctaccggaagatttaccaatggccgtacttcagttgacataatcagtaa |
389 |
Q |
| |
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|| || ||||| || || || |||||||||||||| || || |||||| |||||||||||||||| |
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| T |
5587027 |
aatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaa |
5586959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 5593363 - 5593300
Alignment:
| Q |
221 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
284 |
Q |
| |
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||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
5593363 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
5593300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 362
Target Start/End: Complemental strand, 7017710 - 7017571
Alignment:
| Q |
223 |
caagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatggga |
322 |
Q |
| |
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||||| || |||||||| ||||||| || |||||||| |||||||||||||||||| | || | ||| ||| ||||||||||||| || ||||| | |
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| T |
7017710 |
caagtgccttgtctttttgtttttggtgactctttatctgacagtggaaacaacaatgatcttgttacaactgcaaaagttaattacaaaccatatggca |
7017611 |
T |
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| Q |
323 |
ttgattttccagctggtcctaccggaagatttaccaatgg |
362 |
Q |
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| T |
7017610 |
tcgattttccgacaggtccaacaggaaggtttactaatgg |
7017571 |
T |
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