View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_low_18 (Length: 300)
Name: NF17973_low_18
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 25138407 - 25138562
Alignment:
| Q |
127 |
ttccatttcccctcaaaaagactaaacttccatttctatacgagtaaagtgacaaattttggagggtcaaaaaagagaaaagggattccaaatacagtga |
226 |
Q |
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| T |
25138407 |
ttccatttcccctcaaaaagactaaacttccatttctatacgagtaaagtgacaaattttggagggtcaaaaaagagaaaagggattcgaaatacagtga |
25138506 |
T |
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| Q |
227 |
agaacataaggcatcgaatacacatcaattcaaacatctcgtttttaaacaaaagg |
282 |
Q |
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| T |
25138507 |
agaacataaggcatcgaatacacatcaattcaaacatctcgtttttaaacaaaagg |
25138562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25138283 - 25138328
Alignment:
| Q |
1 |
aataaaattgaagtggcttgttagttaaaaatttaaatgatttaat |
46 |
Q |
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| T |
25138283 |
aataaaattgaagtggcttgttagttaaaaatttaaatgatttaat |
25138328 |
T |
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