View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_low_2 (Length: 650)
Name: NF17973_low_2
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 221 - 639
Target Start/End: Original strand, 48395132 - 48395550
Alignment:
| Q |
221 |
acaatgtaaaactttttacgttgctgcagttaaagtcttttatataattcaacttatcttttcgatctgcgtctctcttcactttaacaggtaccagttg |
320 |
Q |
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| T |
48395132 |
acaatgtaaaactttttacgttgctgcagttaaagtcttttatataattcaacttatcttttcgatctgcgtctctcttcactttaacaggtaccagttg |
48395231 |
T |
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| Q |
321 |
cgtataataacaaggttcgagaattggagagtcaaggtttagaggaagacatactcaacaagaaattggaacttctcagagttagtatatatgcatgatt |
420 |
Q |
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| T |
48395232 |
cgtataataacaaggttcgagaattggagagtcaaggtttagaggaagacatactcaacaagaaattggaacttctcagagttagtatatatgcatgatt |
48395331 |
T |
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| Q |
421 |
taaatttttgtgtttgcattattattataggtgagacttgagaggtgctgatttggttaaccttaattgtatataggaatcatacactatcatgtcatcg |
520 |
Q |
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| T |
48395332 |
taaatttttgtgtttgcattattattataggtgagacttgagaggtgatgatttggttaaccttaactgtatataggaatcatacactatcatgtcatcg |
48395431 |
T |
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| Q |
521 |
ccggatgaaagaagaatgtatgactggagcttgtccagagaagataacacagaaacatacatttggccatttgaggtagatgtttcagtacttcaagaag |
620 |
Q |
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| T |
48395432 |
ccggatgaaagaagaatgtatgactggagcttgtccagagaagataacacagaaacatacatttggccatttgaggttgatgtttcagtacttcaagaag |
48395531 |
T |
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| Q |
621 |
gagatcctccaccacaggt |
639 |
Q |
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| T |
48395532 |
gagatcctccaccacaggt |
48395550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 48394953 - 48395130
Alignment:
| Q |
15 |
agatatggtttagaatgcagctattacggatgcagatcattatggtagacttggcttaccaaaaggatgtccatatgacatggtcagaaacattttatat |
114 |
Q |
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| T |
48394953 |
agatatggtttagaatgcagctattacagatgcagatcattatggtagacttggcttaccaaaaggatgtccatatgacatggtcagaaacattttatat |
48395052 |
T |
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| Q |
115 |
cggatttaattcatatataccttcgtctatgatgaaaagatttttatttcgtcaatcaatcatattcatcaaacatcg |
192 |
Q |
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| T |
48395053 |
cggatttaattcatatataccttcgtcgatgatgaaaagatttttataccgtcaatcaatcatactcatcaaacatcg |
48395130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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