View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_low_25 (Length: 229)
Name: NF17973_low_25
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_low_25 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: scaffold0095 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 26821 - 27007
Alignment:
| Q |
35 |
gaaataaacaaacctggttttggattgagttgaaaagggatgaaaagagattcaacatcccggagtgaaccttcaccggctcctcctcttccttattccg |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26821 |
gaaataaacaaacctggttttggattgagttgaaaagggaagaaaagagattcaacatcccggagtgaaccttcaccggctcctcctcttccttattccg |
26920 |
T |
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| Q |
135 |
acgcgtcgaaaacaacggcactccaccgatactt---------tccaacgttctccaactcggatcggatcccccgccggccatttg |
212 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26921 |
acgcgtcgaaaacaacggcactccaccaatactttccaaaggctccaacgttctccaactcggatcggatcccccgccggccatttg |
27007 |
T |
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Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 39402863 - 39403049
Alignment:
| Q |
35 |
gaaataaacaaacctggttttggattgagttgaaaagggatgaaaagagattcaacatcccggagtgaaccttcaccggctcctcctcttccttattccg |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39402863 |
gaaataaacaaacctggttttggattgagttgaaaagggaagaaaagagattcaacatcccggagtgaaccttcaccggctcctcctcttccttattccg |
39402962 |
T |
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| Q |
135 |
acgcgtcgaaaacaacggcactccaccgatactt---------tccaacgttctccaactcggatcggatcccccgccggccatttg |
212 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39402963 |
acgcgtcgaaaacaacggcactccaccaatactttccaaaggctccaacgttctccaactcggatcggatcccccgccggccatttg |
39403049 |
T |
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