View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_low_4 (Length: 541)
Name: NF17973_low_4
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 35212052 - 35212315
Alignment:
| Q |
16 |
cataggcacttcaatatttacagcttgctcataaagcttgccgttattccatgtttccaatgccgcaagttcatcgttgtgtttctcaaccaaatcagca |
115 |
Q |
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| T |
35212052 |
cataggcacttcaatatttacagcttgctcataaagcttgccgttattccatgtttccaatgccgcaagttcatcgttgtgtttctcaaccaaatcagca |
35212151 |
T |
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| Q |
116 |
acacgcaataggatccgtgatctttcctgcaggggtaagacttaagagacattaatgtaattggttaaaatatgagtttaatgactatgcac-aaaattc |
214 |
Q |
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| T |
35212152 |
acacgcaataggatccgtgatctttcctgcaggggtaagacttaagagacattaatgtaatcggttaaaatatgagtttaatgactatgcactaaaattc |
35212251 |
T |
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| Q |
215 |
aattatatcttactagattggtttagaaatcattgaactcaatatataaatcaaggatgtgcta |
278 |
Q |
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| T |
35212252 |
aattatatcttactagattggtttagaaatcattgaactcaatatataaatcaaggatgtgcta |
35212315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 301 - 526
Target Start/End: Original strand, 35212315 - 35212540
Alignment:
| Q |
301 |
agaaatcacagtttaaggtgtaaaaccactttagtttaaaaggaccataatagtaagtcatttgtaa-ctgtaagatatagtctgagatttgttagaatt |
399 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35212315 |
agaaatcacagtttcaggtgtaaaaccactttagtttaaaaggaccataatagtaagtcatttgtaaactgtaagatatagtctgagatttgttagaatt |
35212414 |
T |
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| Q |
400 |
agttaagtttgttataggtagtttcaacttaaaaggttggttagtaacttagtattaattatttgttaacttagttatgatcaccatattaagtgtatag |
499 |
Q |
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| T |
35212415 |
agttaagtttgttataggtagtttcaacttaaa-ggttggttagtaacttagtattaattatttgttaacttagttatgatcaccatattaagtgtatag |
35212513 |
T |
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| Q |
500 |
tatacactacactccttgttatcaact |
526 |
Q |
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| T |
35212514 |
tatacactacactccttgttatcaact |
35212540 |
T |
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