View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_low_5 (Length: 505)
Name: NF17973_low_5
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 224 - 490
Target Start/End: Original strand, 35922561 - 35922827
Alignment:
| Q |
224 |
tacacaacatagttacctgacaaatgagcatttgaagaccaccttcaagaaaaagggctctcctacccaatctatcaactccaaaaattgagataatggt |
323 |
Q |
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| T |
35922561 |
tacacaacatagttacctgacaaatgagcatttgaaggccaccttcaagaaaaagggctctcctacccaatctatcaactccaaaaattgagataatggt |
35922660 |
T |
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| Q |
324 |
accaaaagcattaacaacgccagttatcacagatgacataagggcagcatcatccttaaacccaacagaactaaatagcacaggtgcataaaacattata |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922661 |
accaaaagcattaacaacgccagttatcacagatgacataagggcagcatcatcctcaaacccaacagaactaaatagcacaggtgcataaaacattata |
35922760 |
T |
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| Q |
424 |
acattgattcctgtaaattgctggaagaatggaatcaatatggccatagaaagttgaggcctatatt |
490 |
Q |
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| T |
35922761 |
acattgattcctgtaaattgctggaagaatggaatcaatatggccatagaaagttgaggcctatatt |
35922827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 35922339 - 35922485
Alignment:
| Q |
10 |
aagaatatgctgctacataagcgcaaatgaatagcaccacaacaattgcataccactttggtaactcaccagggtttccatcaattccaaatttggctcc |
109 |
Q |
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| T |
35922339 |
aagaaaatgctgctacataagcgcaaatgaatagcaccacaacaattgcataccactttggtaactcaccagggtttccatcaattccaaatttggctcc |
35922438 |
T |
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| Q |
110 |
aatagatgcagcaactccaatctttgcacatcaacaaatatagttgg |
156 |
Q |
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| T |
35922439 |
aatagatgcagcaactccaatctttgcacatcaacaaatatagttgg |
35922485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 235 - 490
Target Start/End: Complemental strand, 36202486 - 36202231
Alignment:
| Q |
235 |
gttacctgacaaatgagcatttgaagaccaccttcaagaaaaagggctctcctacccaatctatcaactccaaaaattgagataatggtaccaaaagcat |
334 |
Q |
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|||||||| || |||||||||||| |||||||||||| |||||||||||||||||| | ||||||||||| ||||||||| | ||| ||| | ||| |
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| T |
36202486 |
gttacctggcatatgagcatttgagcaccaccttcaaggaaaagggctctcctaccccacttatcaactccataaattgagacacaagtagcaacaacat |
36202387 |
T |
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| Q |
335 |
taacaacgccagttatcacagatgacataagggcagcatcatccttaaacccaacagaactaaatagcacaggtgcataaaacattataacattgattcc |
434 |
Q |
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| T |
36202386 |
taacaacaccggtgatgacagccgacataagtgaagcatcgtccttaaacccaatggaattaaatagcacaggtgcataaaacatgataacattgatgcc |
36202287 |
T |
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| Q |
435 |
tgtaaattgctggaagaatggaatcaatatggccatagaaagttgaggcctatatt |
490 |
Q |
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| T |
36202286 |
tgtaaattgttggaagaatggtatcaatacagccatagtaagctgaggtctatatt |
36202231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 458
Target Start/End: Original strand, 35490208 - 35490263
Alignment:
| Q |
403 |
acaggtgcataaaacattataacattgattcctgtaaattgctggaagaatggaat |
458 |
Q |
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| T |
35490208 |
acaggtgcataaaacatgataacattgattccggtgagttgttggaagaatggaat |
35490263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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