View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17973_low_9 (Length: 452)
Name: NF17973_low_9
Description: NF17973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17973_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 51 - 435
Target Start/End: Original strand, 1297392 - 1297776
Alignment:
| Q |
51 |
cttatggaccttgtgcaaagagtcgcttgaaacatatcttgggttagacttcggtccaaattgagaatgcaatagtgcgattcatttgttttggttccta |
150 |
Q |
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| T |
1297392 |
cttatggaccttgtgcaaagagtcacttgaaacatatcttgggttagactttggtccaaattgagaatgcaatagtgcaattcatttgttttagttccta |
1297491 |
T |
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| Q |
151 |
aatttaatttctcattcaaaacttataccattaaaatgtgactgtagaaggtttaaagaagtctcaacatcttcaagaaagattaatggttgaaagtata |
250 |
Q |
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| T |
1297492 |
aatttaatttctcattcaaaacttataccattaaaatgtgactgtagaaggtttaaagaagtctcaacatcttcaagcaagattaatggttgaaagtata |
1297591 |
T |
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| Q |
251 |
tccattatttcaattttgcttcggttgctaatgtcaatagaattttattttagaatatagtaaaattcaaacatatcatgaatgatgaagacaacatata |
350 |
Q |
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| T |
1297592 |
tccattatttcaattttgcttcggttgctaatgtcaatagaattttattttagaatctagtaaaattcaaacatatcatgaatgatgaagacaacatata |
1297691 |
T |
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| Q |
351 |
ctcaaccccttctcagaaaaaatacatactcaacccaaatataaagaaacatgcatgtataaatagatactactactattaaagt |
435 |
Q |
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| T |
1297692 |
ctcaaccccttctcagaaaaaatacatactcaacccaaatataaagaaacatgcatgtataaatagatactactactattaaagt |
1297776 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 51264048 - 51263977
Alignment:
| Q |
24 |
gtcctatgtgaggtccttataatggttcttatggaccttgtgcaaagagtcgcttgaaacatatcttgggtt |
95 |
Q |
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| T |
51264048 |
gtcctatgtaaggtctatatcatggttcctatgagccttgtgcaaagagcagcttgaaacatatcttgggtt |
51263977 |
T |
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